BAC Information

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BAC

Clone NameMSMg01-092B21
Chromosome8 (Build37)
Map Location 59,692,521 - 59,693,006
singlet/doubletsinglet
Overlap genenone
Upstream geneHpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355
Downstream geneLOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092B21.T7 (MSMg01no092_b21.b1)MSMg01-092B21.TJ (MSMg01no092_b21.g1)
ACCAG309883AG309884
length695693
length of high quality
(start - end)
490 (50 - 539)434 (77 - 510)
definitionCHROMAT_FILE: MSMg01no092_b21.b1 PHD_FILE: MSMg01no092_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:51 2005CHROMAT_FILE: MSMg01no092_b21.g1 PHD_FILE: MSMg01no092_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAACCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGATGCTCTCCCGTAAACAAGCCTTAGGAACGGACTCTGCC
GTTCTGAGGGCTGCAATGCTCTCGCGCAAGCAACGTGTGTAAGCACATCC
ATAGATCACTGCAGACTCGGGGGCGGAGACCTGGTTTACATACCCAGTCC
CCTCTTCTCTGCCCAGACAGATAATCACGTGGTAAGGATCAGATTAGATT
TGGCTTCCCTTGGGACATGATTAAGTTTGCCAATTTTTATACTTGAACCC
CACAGCCACCTGTTTATACAAACCTTTATTCTTTTCGATGTTCAGTTGCC
CCACACCTGTTGATTAAATAGTATCCATTAAGTCCTTTCTTACATGCTGC
TACTTTCCTCCTCCCCCCTTCTTTTGATGCTATTTCCCACTGTCCTGTTT
TTGACCTCCTTTCTCACAAGGGGAATCTTTTCAAGGGCTCGGACATGAGT
TTCCATTATGGATTCGTGTCTGGGAAAAATGAAAAGGGTAACAGGTGTTT
GCAAAGCATTATGTTTTGAATTGGAGAAATCAGGAATTATAAATCTGAAA
ACCTATTTAATTTTCATCACTGCTTATTAATCTTATTCTTGCTTACGGGC
TTCCTTGTTCTGAAGGAGTGTCAGTATGCATTCAGCTGGTCAGGG
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGAAATTAACTATTCAGTAAC
TAATTTAGCATTACAAAAGATGGCCCCAACAGCTCAGGACTAGTCTGCAA
AATGTTTACTTGGACAGAAAGGACAGTCTTAAGGGTTTACTATGAGAAAA
GTTAGGGAATCCCACTGAGACAGGTTTCTTCATTAGACCCTAAGAATTCA
GGCAGAACTATAGAGCATAAATAAATTTTATGCCTCAGCCCAACCTTTCT
TTTTTATATTGACAACAGGGAGGAGATGTAACCTCCCCCCGCCCCAGCCT
GAACTCAGGCTGATCAGGCTTGACTGTTATCACCAGGAGATCATCGGGGG
TGGAGCCTGCCACCCTATCATTCTGCCACTCCCACTGCTACTACCTTCTG
CCTAGCTGTTCCGGAGTATTCACATGGCCACCTGCAACTGGACTCCAAAG
ATGATTTGGCGGGAATGGGCCCCTCCCCCTTCTTTATAATCCCGTGCTCT
GAATATTAAAATTGAACCTTGATCAGACTAATGTCATGGTTCCATCCTTT
CTCGCACCACCTAGGCTCCCTCTTTTCTTCCAGATTCCAAGATGCCTTCC
AGGCTCAAACCCAGACATGTGCGCTGCTGGCCGGCCTCCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_b21.b1 MSMg01no092_b21.b1 CHROMAT_FILE:
MSMg01no092_b21.b1 PHD_FILE: MSMg01no092_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:51 2005
         (490 letters)



>mm_chr8_59692317_59693206
          Length = 890

 Score =  862 bits (446), Expect = 0.0
 Identities = 476/486 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgatgctctcccgtaaacaagccttaggaacggactctgccgttctgagggctg 64
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 690 gaattctgatgctctcccgtaaacaagccttcggaacggactctgccgttctgagggctg 631

                                                                       
Query: 65  caatgctctcgcgcaagcaacgtgtgtaagcacatccatagatcactgcagactcggggg 124
           |||||||| || | | |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 630 caatgctcacgtgtaggcaacgtgtgtaagcacatccacagatcactgcagactcggggg 571

                                                                       
Query: 125 cggagacctggtttacatacccagtcccctcttctctgcccagacagataatcacgtggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 cggagacctggtttacatacccagtcccctcttctctgcccagacagataatcacgtggt 511

                                                                       
Query: 185 aaggatcagattagatttggcttcccttgggacatgattaagtttgccaatttttatact 244
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aaggatcggattagatttggcttcccttgggacatgattaagtttgccaatttttatact 451

                                                                       
Query: 245 tgaaccccacagccacctgtttatacaaacctttattcttttcgatgttcagttgcccca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgaaccccacagccacctgtttatacaaacctttattcttttcgatgttcagttgcccca 391

                                                                       
Query: 305 cacctgttgattaaatagtatccattaagtcctttcttacatgctgctactttcctcctc 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 390 cacctgttgattaaatagtatccattaagtcctttcttacatgctgctactttcctccgc 331

                                                                       
Query: 365 cccccttcttttgatgctatttcccactgtcctgtttttgacctcctttctcacaagggg 424
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ccccctccttttgatgctatttcccactgtcctgtttttgacctcctttctcacaagggg 271

                                                                       
Query: 425 aatcttttcaagggctcggacatgagtttccattatggattcgtgtctgggaaaaatgaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aatcttttcaagggctcggacatgagtttccattatggattcgtgtctgggaaaaatgaa 211

                 
Query: 485 aagggt 490
           | ||||
Sbjct: 210 acgggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)