BAC Information

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BAC

Clone NameMSMg01-092D06
Chromosome8 (Build37)
Map Location 43,651,877 - 43,815,922
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039376, Gm1815, LOC671994, Zfp353, EG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092D06.T7 (MSMg01no092_d06.b1)MSMg01-092D06.TJ (MSMg01no092_d06.g1)
ACCAG309949AG309950
length755759
length of high quality
(start - end)
305 (113 - 417)109 (191 - 299)
definitionCHROMAT_FILE: MSMg01no092_d06.b1 PHD_FILE: MSMg01no092_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:59 2005CHROMAT_FILE: MSMg01no092_d06.g1 PHD_FILE: MSMg01no092_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,651,877 - 43,652,179)(43,815,814 - 43,815,922)
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCNNCNNNNCNCC
CCCCCTCCCCCNCCCCTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCTTTTACATGCGGATTGTATTTAATGCCA
ATAATGTCTCTTTACTAATGATCTACATTAGTTAAACACCCTTTTATTTT
TTTCGAATTAAGATAAAAGACATTCTCAGACTCAGATCTATGAACATGAT
GATTACTCCAAGAAGTTTCATCTTGTCGAATTGTGGAACGGAAGATCACC
TCTGAGGTGTGAAATGGATGGATGCTAGAAACTTTTTACTAATTTTAGTT
TTATAATCTTTAAAAATAGGTATTAAGGTATTATTCTCAACACAATCAAC
TCTTAGTTCCAACTCTGATTAATTCAGATTAATCAGGACCCATCAGACTA
ATTACTATATTTCATTTAATTATCGATAATAATAAATGTGACCTTTGAAA
GCTCTTTGTCTTTGTAGGCCACCAAAGATCATGTACATTATGGATAGCAT
ACAGAAATATTCTTCTAGTGTCTGTTTTCATCTGCACTATTTATGTTCAC
TATTAGGGAAAGCATTATTTTTCTTTATTAATTTCTGTCATTAACCTACA
TGTTTTCTGTTACCTGTCTATTATAAGACCATGTCTTTCCTCCCAGTTTT
GTTCTTATTCTATTATAATCATATTGGCGTCTATTTTTATTTCTTTTTGC
CTTTT
NNNNNCCCCNNNNNNNNNNNNNNCCCCNNCCCCCCCCNNCCCNCCCCCGC
NNNNCCCTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTTATGCAGAAAAACCT
TGAAATCAAAGGTTCAGAGGCTCATTTTCCCCGGCTGGAGATTGGAGATA
GCATTTCTTTGAACTGGTTGCATGATTGCACATGATGTCATTAGAGCTTG
CCTTTCCAGCGAGTGAATGAGAAAGGAGAGTTGTCTAGGAGCTGGCATAC
ATATAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGAGA
GAGAGAGTGCTTTACTAGGCAAACTTCTTAAAGTTTCCACCCCCTCTAAG
AAATTCCCAGCTGAGAATGATTATCTTACCCCATGACCATCTATAGGATG
CTACGGACTCATACAATATCATTGCTCACAAATTATATTCAATATATTCC
TAGAGTTTTCTCTAAAATAATATTCTACCACATCTTAAACTCATGATTAT
ATTACCCTTCTGGGAGAGGCCTGTTTAATATTTATTTCTTTTTCTATATT
ATTAATAGGTATCCCCGCTACAAATTTTAATAATGATTTTCCATTGCCCC
CTACTCTATGATATCTGGCCTCTATCGTTTATTAATTTTTTACGGCCTTT
AAAACAAAAAGAACATCATAAACTAACATGTCCATAGGTATATCCCTTTA
CCTACCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_d06.b1 MSMg01no092_d06.b1 CHROMAT_FILE:
MSMg01no092_d06.b1 PHD_FILE: MSMg01no092_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:59 2005
         (305 letters)



>mm_chr8_43651674_43652379
          Length = 706

 Score =  563 bits (291), Expect = e-165
 Identities = 300/303 (99%), Gaps = 1/303 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttttac-atgcggattgtatttaatgccaataatgtctctttactaatgatct 62
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttttacaatggggattgtatttaatgccaataatgtctctttactaatgatct 263

                                                                       
Query: 63  acattagttaaacacccttttatttttttcgaattaagataaaagacattctcagactca 122
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acattagttaaacactcttttatttttttcgaattaagataaaagacattctcagactca 323

                                                                       
Query: 123 gatctatgaacatgatgattactccaagaagtttcatcttgtcgaattgtggaacggaag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gatctatgaacatgatgattactccaagaagtttcatcttgtcgaattgtggaacggaag 383

                                                                       
Query: 183 atcacctctgaggtgtgaaatggatggatgctagaaactttttactaattttagttttat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcacctctgaggtgtgaaatggatggatgctagaaactttttactaattttagttttat 443

                                                                       
Query: 243 aatctttaaaaataggtattaaggtattattctcaacacaatcaactcttagttccaact 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatctttaaaaataggtattaaggtattattctcaacacaatcaactcttagttccaact 503

              
Query: 303 ctg 305
           |||
Sbjct: 504 ctg 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 706
Length adjustment: 9
Effective length of query: 296
Effective length of database: 697
Effective search space:   206312
Effective search space used:   206312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no092_d06.g1 MSMg01no092_d06.g1 CHROMAT_FILE:
MSMg01no092_d06.g1 PHD_FILE: MSMg01no092_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:59 2005
         (109 letters)



>mm_chr8_43815614_43816122
          Length = 509

 Score =  211 bits (109), Expect = 1e-59
 Identities = 109/109 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attggagatagcatttctttgaactggttgcatgattgcacatgatgtcattagagcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 attggagatagcatttctttgaactggttgcatgattgcacatgatgtcattagagcttg 250

                                                            
Query: 61  cctttccagcgagtgaatgagaaaggagagttgtctaggagctggcata 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cctttccagcgagtgaatgagaaaggagagttgtctaggagctggcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)