BAC Information

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BAC

Clone NameMSMg01-093F04
Chromosome8 (Build37)
Map Location 54,388,542 - 54,388,862
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623935, 1190028D05Rik, LOC676688
Downstream geneAga, Neil3, LOC100040107, Vegfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093F04.T7 (MSMg01no093_f04.b1)MSMg01-093F04.TJ (MSMg01no093_f04.g1)
ACCAG310798AG310799
length1,2481,169
length of high quality
(start - end)
252 (42 - 293)324 (71 - 394)
definitionCHROMAT_FILE: MSMg01no093_f04.b1 PHD_FILE: MSMg01no093_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:47 2005CHROMAT_FILE: MSMg01no093_f04.g1 PHD_FILE: MSMg01no093_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGCTTTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCATTTTGAAAAGTACCTTTAAACCTTATGTTTTAAATTTGACACTTAC
CAATAATACCCACTTTGATGGTTAGTGATAATTGTAAGTGTGGTAAAATC
TCGGATTGCCTTGAAGATGTGACTCCGGACAGGCACGTGGGGAGTTATCT
TGGTTGCATTGAATGAGATGGGGAGAACTGTCCACTATAGAAGGTACTAT
TCCCCAGACAGTATCCTGGGTTATATGGGTAAAGAAAAGGAACCGAGCAT
TCAGGACTAGGCACCCTTTATCCTCTGATCCTTGGTCGTAACGATAATGT
GGCCAGCTGTTTGAGTCTCCTGTCATGTTGACTCTGTGACTTCCTCTTTT
ATATACTTGATCTGTGAGGCTTAATATAAATAAATCATTTCTCTGCTTAT
TGTCCCCCCCCCCAGGTATTTTATTCCATTCCTTACCAAAGAATTATTAT
TCCATCCTTTAATATGATTCATTACGATACATTTTATTTGTCCATTTCCC
TTCATATTTTTCTTGCTTATACTTTATGTTCTTTTATTCTCTATTTCTTT
TTTCCCTTCTTACTGTTATTTTTTTTACTTCTTTAGTACCTTACCTGCTC
CTTTATTTCTTTTTCCCCTTATTGTGCTTTTTTCTGTTTTTTTTTTTCTC
CTTTCTTCTTTATTCTTCCCTTTTTTCCTTTTCTTTTCTCTTTTTCTTTT
TTTCTTTTCCCTCTCTCTTTTTCTTCATTTTTCCTTTCTCTTTTATTCCT
CTTTTTTTCTTTCTCTTTGTTCTCCTTTTTTTTTCTCTTTTTCTTTTTAT
TTCTTTTTTTTTTTCCTTTTTCTTCTTTTTTTTTACTCTTTTTCTCTTTT
TTTTTTTTTCCCCTTTTCTTTTTTTTTTTTCTCTTTTTTTTCTATCCTTT
CTTTCTTCTTTTTTTTCTTCCTTTATTTTTCCTCTTTTTCTTCTTTTTTT
TTTCCTTCTTCTTCTTTTTTCTTTTCTCTTATTTTTCTTATTTTTTTTTT
TCTTTTCTTCTTTTTCTTCTTTTTTTAATTCTATCTGCTTTCTTTTTCTT
TTTTTTTCTCTTTCTTTATTTCTTTCTACTTTTCTTTTTAATCTATTTCT
TCTTCTCTCCTTCTTATTATCTTTATCTTATCTCCTATCTCCTTTATCAT
TCTTTCTTCTTTCTTTCTTTCATTACCTATTCTTTCCCCCCTTTTTTT
TGTAGCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTCCTTGAGTTAGTATGGGTGACTTTTCATTAATGCA
CATGGCTGCTGATACTTTTAAAACTCAGTGGGAGTGAAGATTTTCATCGT
TTTTCACTTTCTATTTAATCATTCTTTAGAGTTATCTAATTCACCTGTCA
CCAGGCTCTAGGTTTAATTAAAAACAACAATGAGGAAAACACTTTGAACG
TTAGTATGTGCTCCTCTAGTCTTTTAGATAAAACTTTGAAATAGCAATGC
TGAAATTCATCTATGAACATTGAAAAGCAAGTCTAAATTTGCACTAAACT
TTATTTTTTGTTGTTGTTGTTGTTGCTAATGATAGACTCTATCGACTATT
GACTTAACAAGAACATGCTTGTGACTGAAACAATCCTGGCCATTTATTTG
CTGCTGCCCCAGCGATACAAGAACATCATCATGAGGAATTAATAGGAGAT
ATGAGCAAAGGATAATTTTAGAAATCTGCTAGGCTGAAGCTAATTCACTT
TTTGTCTCATCATAGATTCTTAGCGCCATGTCATATATTTTAGTATAATA
TTATACCGGTCCGTGCCTCACCTATAAAATTTATGATTCCTTGTATATAT
TTACAAACTTTTTTGAGTACTCTTCCTTTCCTGCATTTACTTATTACTGA
CTCTTTTACCTATTGTTGATTTGATACTTGTCTATTTGTTTCTTCTACCT
ATTTTTTTTCTTCTCATATTATTCCTTTCTCTTTTTTTCCTTCCTACTCT
TTTCTATCTAACTTTATATTTTATTTCCCTTTTTTCTTTTTTTTTTTACT
TTATACTCTTCATTTTTTTCTCTTTATCTTCTTTCATTTTTATTTCTTAT
TTCTCTTTATCTTTTTATTTTATATCCTCTTTTTCATCCTCTTTTCCTTC
CTTTCATATATTTTATCTTTTTTTCTGTCTTCCTCTTTTTTCTTTTTTTC
TCTCTCTTTCCATTTCTCTCCTTTTGTTTTTTATTTTCCTTTTTTTTCCT
CATTTCTTTAATTTATCTTTTTATTTCTTTAATCTCTATTTTCATTTATC
TCTTATATATCCTTATTTCTTTCTCTTATAACTTTCTATTTCACAATGTT
TCCCTACATCTCACTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_f04.g1 MSMg01no093_f04.g1 CHROMAT_FILE:
MSMg01no093_f04.g1 PHD_FILE: MSMg01no093_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:47 2005
         (324 letters)



>mm_chr8_54388342_54389062
          Length = 721

 Score =  588 bits (304), Expect = e-172
 Identities = 318/324 (98%), Gaps = 3/324 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttagtatgggtgacttttcattaatgcacatggctgctgatacttttaaaactcagtg 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 agttagtatgggtgacttttcattaatgcacatggttgctgatacttttaaaactcagtg 260

                                                                       
Query: 61  ggagtgaagattttcatcgtttttcactttctatttaatcattctttagagttatctaat 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 ggagtgaagattttcatcgtttttcactttccatttaatcattctttagagttatctaat 320

                                                                       
Query: 121 tcacctgtcaccaggctctaggtttaattaaaaacaacaatgaggaaaacactttgaacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacctgtcaccaggctctaggtttaattaaaaacaacaatgaggaaaacactttgaacg 380

                                                                       
Query: 181 ttagtatgtgctcctctagtcttttagataaaactttgaaatagcaatgctgaaattcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagtatgtgctcctctagtcttttagataaaactttgaaatagcaatgctgaaattcat 440

                                                                       
Query: 241 ctatgaacattgaaaagcaagtctaaatttgcactaaactttattttttgttgttgttgt 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 ctatgaacattgaaaagcaagtctaaaattgcactaaactttattttttgttgttgttgt 500

                                   
Query: 301 tgttgctaatgatagactctatcg 324
           ||   |||||||||||||||||||
Sbjct: 501 tg---ctaatgatagactctatcg 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 721
Length adjustment: 9
Effective length of query: 315
Effective length of database: 712
Effective search space:   224280
Effective search space used:   224280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)