BAC Information

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BAC

Clone NameMSMg01-094N02
Chromosome8 (Build37)
Map Location 127,059,011 - 127,197,069
singlet/doubletdoublet
Overlap geneCog2, Agt, Capn9, 2310022B05Rik, Ttc13
Upstream geneGas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5
Downstream geneArv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1, Sipa1l2, 4933403G14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094N02.T7 (MSMg01no094_n02.b1)MSMg01-094N02.TJ (MSMg01no094_n02.g1)
ACCAG311884AG311885
length777757
length of high quality
(start - end)
216 (215 - 430)330 (135 - 464)
definitionCHROMAT_FILE: MSMg01no094_n02.b1 PHD_FILE: MSMg01no094_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:37 2005CHROMAT_FILE: MSMg01no094_n02.g1 PHD_FILE: MSMg01no094_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,059,011 - 127,059,226)(127,196,740 - 127,197,069)
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTTNNNNNNNCCCCNCCCCNNNNNTTCCTTCCTCCTTTCTATXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACTCC
CACCAACCACATGGTGGCTCACAGCCATCTGTAATAGGATCTGATGCCTC
TTCTGGTCGCCCTCTGAAGAGAGCAACAGTGTATTCACGTACATAAAATA
TATAAATAAATACATAAATAGAAAACAAAACCAAGCAAACAATAACATCT
AAACAGAGAGCGCCTGAGTGTTCTTCTCACTTCTGTAGTGCCTGGCTCCT
GGTTCCCTTTTAAATGCCATTGTTGAGCAGTTCCCGTTTGTCTGTAGGTG
ATGTTGAGCAATTCCCATTTGTCTGTCTGTAGGTGATGTCGAGCATTTCC
CATTTGTCTGTCTGTAGGTGATGTCGAGTATCTCCCATTTGTCTGTCTGT
AGGTGACCGCCGAGAAATTCGTTGATTCTCACCCCAGTGGACCTTCCATC
TCATGTACAACAAGCTTCTGGAATTTGTCCCTCATCACTGCCGCCTTCTC
CGTTATCTCATTCGAGCAGCTGTGTCCAGGCCGAGATAACGGCCTCATTC
CTGACCTGCACCCTTCCTGATCAGGCCCTGCGTGCTTGATGTACCTGCCC
CGCTTGTCGTAAAATCCGTCCTGAATTCATTTGCTTCCACTATATTCGGG
CTTTTGTCTCTTCTTCGGGACGGATAT
TTATAAATTTACATTACTCTCCTTCTCCCCCCNCCCCCCCACACCCCNCT
TCTCTCCCCCTGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACAAGATCCCAAGA
CCAAGGTGGCCAGCTCAGCTAGCCTGTATCTGCGAACTCTGAGCTCAGCA
ATAAATACAGTGGAGAGGAGTCAAGGGAGAGTCTCAATGTCAACCTAGGG
CTAACACATACACACGCACACACTCGCACGTACACACATACATAAATACG
CACACACATACACACGCACACACACAAACACCCGCCACCCACATTGTCGC
CTTGTGCCAGAATCCAGCAAGGTGCCTAAGAGCTGTACCTCCAGAAATGC
TGGGCAGTGAGTACAAACAAGCTTGAGCTAGACACTGTGACTTATTCCAC
ATCCCTTCTTGCCTACATGACACCAGCCACTGTGTCATCTAGTGGGCCAC
TTGAGCTGTGCTTAAAACTGAGAAATACGTGTCTGCCATCCACATTGCTT
AGCTTGTCCCAGAGTATGTTTTTGAGGCTACTCATTTACACATGGTTTGT
TGATGTGGCCGCAAGGAGGAGGGTCCTGCTTCCTTTAGGTAATTTCAGCA
AATCTTTCCCCAAACTACACAGCCACATGTTGCACAGTTATGGTTCATGA
CAAACCTGGAAAGCTATGTTTCTCAAGGATTATGGGCAATTCTGTACTTA
AGATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_n02.b1 MSMg01no094_n02.b1 CHROMAT_FILE:
MSMg01no094_n02.b1 PHD_FILE: MSMg01no094_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:37 2005
         (216 letters)



>mm_chr8_127058811_127059426
          Length = 616

 Score =  402 bits (208), Expect = e-117
 Identities = 214/216 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaagagagcaacagtgtattcacgtacataaaatatataaataaatacataaatagaaa 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaagagagcaacagtgtattcacatacataaaatatataaataaatacataaatagaaa 260

                                                                       
Query: 61  acaaaaccaagcaaacaataacatctaaacagagagcgcctgagtgttcttctcacttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaaaccaagcaaacaataacatctaaacagagagcgcctgagtgttcttctcacttct 320

                                                                       
Query: 121 gtagtgcctggctcctggttcccttttaaatgccattgttgagcagttcccgtttgtctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagtgcctggctcctggttcccttttaaatgccattgttgagcagttcccgtttgtctg 380

                                               
Query: 181 taggtgatgttgagcaattcccatttgtctgtctgt 216
           ||||||||||||||||||||| ||||||||||||||
Sbjct: 381 taggtgatgttgagcaattccaatttgtctgtctgt 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no094_n02.g1 MSMg01no094_n02.g1 CHROMAT_FILE:
MSMg01no094_n02.g1 PHD_FILE: MSMg01no094_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:37 2005
         (330 letters)



>mm_chr8_127196343_127197072
          Length = 730

 Score =  630 bits (326), Expect = 0.0
 Identities = 329/330 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacaagatcccaagaccaaggtggccagctcagctagcctgtatctgcgaactctgagc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 727 agacaagatcccaagaccaaggtggccagctcagctagcctgtatctgtgaactctgagc 668

                                                                       
Query: 61  tcagcaataaatacagtggagaggagtcaagggagagtctcaatgtcaacctagggctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tcagcaataaatacagtggagaggagtcaagggagagtctcaatgtcaacctagggctaa 608

                                                                       
Query: 121 cacatacacacgcacacactcgcacgtacacacatacataaatacgcacacacatacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cacatacacacgcacacactcgcacgtacacacatacataaatacgcacacacatacaca 548

                                                                       
Query: 181 cgcacacacacaaacacccgccacccacattgtcgccttgtgccagaatccagcaaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cgcacacacacaaacacccgccacccacattgtcgccttgtgccagaatccagcaaggtg 488

                                                                       
Query: 241 cctaagagctgtacctccagaaatgctgggcagtgagtacaaacaagcttgagctagaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cctaagagctgtacctccagaaatgctgggcagtgagtacaaacaagcttgagctagaca 428

                                         
Query: 301 ctgtgacttattccacatcccttcttgcct 330
           ||||||||||||||||||||||||||||||
Sbjct: 427 ctgtgacttattccacatcccttcttgcct 398


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)