BAC Information

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BAC

Clone NameMSMg01-095D01
Chromosome8 (Build37)
Map Location 36,125,192 - 36,308,094
singlet/doubletdoublet
Overlap geneLOC666797, LOC666804
Upstream geneDctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks, LOC666792
Downstream genePpp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095D01.T7 (MSMg01no095_d01.b1)MSMg01-095D01.TJ (MSMg01no095_d01.g1)
ACCAG312163AG312164
length771789
length of high quality
(start - end)
387 (102 - 488)285 (157 - 441)
definitionCHROMAT_FILE: MSMg01no095_d01.b1 PHD_FILE: MSMg01no095_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:08 2005CHROMAT_FILE: MSMg01no095_d01.g1 PHD_FILE: MSMg01no095_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,307,712 - 36,308,094)(36,125,192 - 36,125,476)
sequence
NNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNTTTTNNTTTTTTCTTCTC
TANNNCCCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCCGCGGAATTCCACACTGTCAGTCCCAAGCCGCTGATTTTTCACAACCC
TGAAGTCCTCCTTTGGAATCAGGGGTGGTGTCTCTGTAGTGGCTTTGGCC
AGCCTTTTCAGCTGCTCTTTCCTTCTCTGGTACTCCAACCCTTCCAAAGC
AGGACAGTGTGAAGTTGGGAGAGCAAGCCTTTCTCTTCACCCACATGGCT
TCCTTTGGAAGCAGATACGCCCTTTCTGCCTGGGCCCCCATGGTCATGTC
CGGAGCTCACCAGCTCACAACAGAGATGCCCTGCGCTGGTAAATCAGAAG
CACAGAATCCCAAGAGCCATTGCTTCCATTACAATTACACGCTCATCTAT
CTGACTTTGGGAAAAGCTGGGGTTGGAAGCCTTTAGTTGGGGTGGCGGGG
GTGGAGGACTGGTTTATGACCTCCTTACCCCATCCCTCTTTTCCCCTTAA
TATCATATCTCTTTTATCCTTTATTTTACCTTTCCACCCTTTTTTTTTTC
CCCTTATTTTTCCCTATCCCTCTCTCCCCCACTTCAATCTCTTACCCCAT
TTCTTATCCACGCAACCCTACCTCCCCCCCTCCAAAACTGCCTTCTGCCT
TTTTCTCATCCCGTGTCCTTTCAGGTATTTTTATTTTCCTTTTATTCCCT
TCCCCTTCTCTAGTTTATCTG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGGAAAAANNNCCTCCTATGATAGGAGXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTATCACCGGGAAACTTAAGGGATTTAGAGCTCTGTAGCAGTAC
ATTACAAAGGCCTCAAGAGCTCCATGCAGGAATGAAGAATTCTTCTAGTG
CCCCTATATATGAGGATCTTAAGGAGTTCTAGCTCAAGAACTTGGAGAAG
ACACTATATATTTTGGGTCTCCCCCCTCTAATTTTAGTCTTGAGATCTTT
CTTTGGAAGGTGGCTAATAACTGAACCTTAGCCTGGTAGGGTCTGGTCAT
AGATGCTCAGACAATGCTCTTCATGGGGGTTACTTCTTCATCTTTTTGAC
CGCCCCACCGACCAGGTTCTGACCTATGGCCAGGTGCCCTCCCTCNCAGG
ATAACTGAAAATTCCAGGAGGTAGGCTGGGGATGCTTGTAACACTTGTGC
ATAGTCTGTTCCTACCGAGACTACTGCTATCTAATAAAACCATGGCTGGG
TTGTTAGTGCTTTGCTAGGAAAAGATGACCGCTTAACCCTGCGAAAACTG
ATCACCAGAAGTCATCCCATCCGACTCCGGGGCTTGAACTTCAGCGGCTA
TCATTGAATCCCTGAAGAACCGGTACCTAGGCCAGGATCTCACCGGCTGT
GAATGTACCCCTGTCTTTTCTCTATTTTGCCAAACCGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_d01.b1 MSMg01no095_d01.b1 CHROMAT_FILE:
MSMg01no095_d01.b1 PHD_FILE: MSMg01no095_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:08 2005
         (387 letters)



>mm_chr8_36307508_36308294
          Length = 787

 Score =  725 bits (375), Expect = 0.0
 Identities = 381/383 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattccacactgtcagtcccaagccgctgatttttcacaaccctgaagtcctcctttg 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ggaattccacactgggagtcccaagccgctgatttttcacaaccctgaagtcctcctttg 528

                                                                       
Query: 65  gaatcaggggtggtgtctctgtagtggctttggccagccttttcagctgctctttccttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gaatcaggggtggtgtctctgtagtggctttggccagccttttcagctgctctttccttc 468

                                                                       
Query: 125 tctggtactccaacccttccaaagcaggacagtgtgaagttgggagagcaagcctttctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tctggtactccaacccttccaaagcaggacagtgtgaagttgggagagcaagcctttctc 408

                                                                       
Query: 185 ttcacccacatggcttcctttggaagcagatacgccctttctgcctgggcccccatggtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ttcacccacatggcttcctttggaagcagatacgccctttctgcctgggcccccatggtc 348

                                                                       
Query: 245 atgtccggagctcaccagctcacaacagagatgccctgcgctggtaaatcagaagcacag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atgtccggagctcaccagctcacaacagagatgccctgcgctggtaaatcagaagcacag 288

                                                                       
Query: 305 aatcccaagagccattgcttccattacaattacacgctcatctatctgactttgggaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aatcccaagagccattgcttccattacaattacacgctcatctatctgactttgggaaaa 228

                                  
Query: 365 gctggggttggaagcctttagtt 387
           |||||||||||||||||||||||
Sbjct: 227 gctggggttggaagcctttagtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no095_d01.g1 MSMg01no095_d01.g1 CHROMAT_FILE:
MSMg01no095_d01.g1 PHD_FILE: MSMg01no095_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:08 2005
         (285 letters)



>mm_chr8_36124992_36125676
          Length = 685

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatcaccgggaaacttaagggatttagagctctgtagcagtacattacaaaggcctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatcaccgggaaacttaagggatttagagctctgtagcagtacattacaaaggcctcaa 260

                                                                       
Query: 61  gagctccatgcaggaatgaagaattcttctagtgcccctatatatgaggatcttaaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctccatgcaggaatgaagaattcttctagtgcccctatatatgaggatcttaaggag 320

                                                                       
Query: 121 ttctagctcaagaacttggagaagacactatatattttgggtctcccccctctaatttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctagctcaagaacttggagaagacactatatattttgggtctcccccctctaatttta 380

                                                                       
Query: 181 gtcttgagatctttctttggaaggtggctaataactgaaccttagcctggtagggtctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcttgagatctttctttggaaggtggctaataactgaaccttagcctggtagggtctgg 440

                                                        
Query: 241 tcatagatgctcagacaatgctcttcatgggggttacttcttcat 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatagatgctcagacaatgctcttcatgggggttacttcttcat 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)