BAC Information

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BAC

Clone NameMSMg01-095G22
Chromosome8 (Build37)
Map Location 37,370,843 - 37,371,502
singlet/doubletsinglet
Overlap genenone
Upstream genePpp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1
Downstream geneEG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095G22.T7 (MSMg01no095_g22.b1)MSMg01-095G22.TJ (MSMg01no095_g22.g1)
ACCAG312346AG312347
length7111,415
length of high quality
(start - end)		664 (43 - 706)---
definitionCHROMAT_FILE: MSMg01no095_g22.b1 PHD_FILE: MSMg01no095_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:27 2005CHROMAT_FILE: MSMg01no095_g22.g1 PHD_FILE: MSMg01no095_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTACTAAACTTCAATGACAAACGATGCTGTACTTTGGTTATTTGGGAAA
TGAATCAGAAGGAAACCAGTTACCTTTCTTTTTCAACCCCTACGACTTTC
GGCATCTAGAACAACGCCTCCCTCTAGTAGCAAGTAGGCCTAATTGTTTG
AAGGGTTAAAATGAATTTTGAAAGATCTTCTCCCATTAGGATTTGGAACT
GAAGCATGCAAAGTCCGGATCTTTTGCTTTTCTCCCTTCCCAAGCCCTGA
GGACATCAGTTACCCAAACAGCTGAGGTTGATTATCACCCACACCCTTGT
TCTCCTGCCCCTCACCCCAATCTATCACCCCCTCTTGTGCTGACAAGTCT
TGTGCCAACTTGACAGGAGCTAGAGTCCTTTTAGAAGAGGACAGCTCAGT
TTGAACACCCACCACCACAACCACCACACCGGCCTGTGGGCATGCCTGTG
ATGCATTTTCTGGGTTAATGATTAACATGTGGGAGAGCCCTGCTTCACTG
TGAATAGTGTTGCCCCTGGGCTAGTAGTCCTGGGTGCTAGAAGAAAGCAG
TCTGACACAAGCCATATGAGTAGTATTCATTCCTCCATGGCCTCTGCTTC
AGTTCCTGCCTCCAGGTTCCTGTCCTAAGTTTCCTGGATGATGGACTATG
AAAGAGTAAGA

GGGGTGGTGGTGGTGGGGTGGGGTGGGTGTGAGNGTGAGTGAGGGTGCTG
GGCCGCCCGGANNNNCCGACCAACTCATTAACACAAAAAAGACAATACCA
GAGGAAAACTCTCTCTTAAAAAGAGAAANTNCCGCGAGGGGTCCTCAAGA
AAGAGAGGCCCTAAGGGGAGGAAAGGGCTTCCCTTTTCTCCCAAAAATAA
AGAGAGAAAAAGAGAGGAAAAAAAGGATNCCAAATAAATATAATGCGAAG
CACACAGAGAGTATTTTCTTTCCCTCCATAGAGAAAGAGAAGAGGGGGGG
TGTATGGAATATGAGAAGAGAATAAAGAAAAACAAAATAATATAGTGAGT
GAATAGAGAATAAAAAATAAGAAGAGAAAAGAAAAGATTTTATATTTTAT
ATCTCCTCCCCCCCATCTTCAAAAAATCAAAAAGAAGAGAAAGGGGAGGT
GGCGGGAGTTGGNGNGGTAAACGAATATATATAGATTGTCATTGAGGTTA
GAAGGATAAGAAAGAGCGAAAACGTTAGGAAAAATAAAAATGAGTTAAGA
GAGGTCCGAAAAAAGAGACAAGAAGAAATAAAATATGTGGAAAACTGGAA
GAAGAAGATAATTTTATATATGACAGACGCGGAGAGAGGAGAACAATAGA
CAAGAGAGAAGAGAACAATGAAACGAAAATTTTTTGNGGTGANTTTTACC
ACCCCCCCCCCCCGCCCCACGCCCGATTGATAAATGATTAGATGATGATA
TAGAATTGTATGTATGGAGAGCGCGCGCGTCTCTCTCTTCTCTCGTCGAC
GAAAAAAAAAGAATAATAATACAAATGAGGTGGGTGATGGTGATATGTCN
ATGGCGGCGCTGACTCAACATCNTAGTATATCGAAATAATGTGATTGATA
TAGCAAACAGATGAGCTGAGAGGAAGGTGTGCAGGTGAGACAACACAAAG
ATGATAAACAATATATATAAGAATGAGACAACTCAACAGTAAACTACGCA
CGTTAATTAAACGCACANCCGCTACTCAATATAGATTGGTGTATGAGACA
CCGCGGAGCGTGGGCTAAGGACGATTCAAGAGAATATAGGATGCGCGCAG
AGTATAACGACGCGCCAGGTGCGTCCTCAACCTCACAAATATATACAAAT
TAGTCACATCAGAGGCTGCGAGCGTGCGTGAAGCAGAAGTATAATAAAGA
TGATATGACGGGATATATATACTATAAATATCTGCTCATGCCGTCAACGT
CACCGGAGCACGCGTATATGGTGACCGACTATATACACATAAGTCAAGAA
GAGCCTGGTAAGTGAGTNANANGTCATTATCGAGGCGAGAGATTATGTGA
GAGAGTGGTTGCACTGGGTGAATGCGGAGAAGTATAAGAGAGACGAGAAT
AGGAGAATGGGATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_g22.b1 MSMg01no095_g22.b1 CHROMAT_FILE:
MSMg01no095_g22.b1 PHD_FILE: MSMg01no095_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:27 2005
         (664 letters)



>mm_chr8_37370639_37371702
          Length = 1064

 Score = 1276 bits (660), Expect = 0.0
 Identities = 660/660 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctactaaacttcaatgacaaacgatgctgtactttggttatttgggaaatgaatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctactaaacttcaatgacaaacgatgctgtactttggttatttgggaaatgaatc 264

                                                                       
Query: 65  agaaggaaaccagttacctttctttttcaacccctacgactttcggcatctagaacaacg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaaggaaaccagttacctttctttttcaacccctacgactttcggcatctagaacaacg 324

                                                                       
Query: 125 cctccctctagtagcaagtaggcctaattgtttgaagggttaaaatgaattttgaaagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctccctctagtagcaagtaggcctaattgtttgaagggttaaaatgaattttgaaagat 384

                                                                       
Query: 185 cttctcccattaggatttggaactgaagcatgcaaagtccggatcttttgcttttctccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttctcccattaggatttggaactgaagcatgcaaagtccggatcttttgcttttctccc 444

                                                                       
Query: 245 ttcccaagccctgaggacatcagttacccaaacagctgaggttgattatcacccacaccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcccaagccctgaggacatcagttacccaaacagctgaggttgattatcacccacaccc 504

                                                                       
Query: 305 ttgttctcctgcccctcaccccaatctatcaccccctcttgtgctgacaagtcttgtgcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgttctcctgcccctcaccccaatctatcaccccctcttgtgctgacaagtcttgtgcc 564

                                                                       
Query: 365 aacttgacaggagctagagtccttttagaagaggacagctcagtttgaacacccaccacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacttgacaggagctagagtccttttagaagaggacagctcagtttgaacacccaccacc 624

                                                                       
Query: 425 acaaccaccacaccggcctgtgggcatgcctgtgatgcattttctgggttaatgattaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaaccaccacaccggcctgtgggcatgcctgtgatgcattttctgggttaatgattaac 684

                                                                       
Query: 485 atgtgggagagccctgcttcactgtgaatagtgttgcccctgggctagtagtcctgggtg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgtgggagagccctgcttcactgtgaatagtgttgcccctgggctagtagtcctgggtg 744

                                                                       
Query: 545 ctagaagaaagcagtctgacacaagccatatgagtagtattcattcctccatggcctctg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctagaagaaagcagtctgacacaagccatatgagtagtattcattcctccatggcctctg 804

                                                                       
Query: 605 cttcagttcctgcctccaggttcctgtcctaagtttcctggatgatggactatgaaagag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cttcagttcctgcctccaggttcctgtcctaagtttcctggatgatggactatgaaagag 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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