BAC Information

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BAC

Clone NameMSMg01-095M13
Chromosome8 (Build37)
Map Location 67,579,642 - 67,579,928
singlet/doubletsinglet
Overlap genenone
Upstream geneTll1, LOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60
Downstream geneLOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, March1, LOC100040986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095M13.T7 (MSMg01no095_m13.b1)MSMg01-095M13.TJ (MSMg01no095_m13.g1)
ACCAG312616AG312617
length709700
length of high quality
(start - end)
257 (44 - 300)588 (73 - 660)
definitionCHROMAT_FILE: MSMg01no095_m13.b1 PHD_FILE: MSMg01no095_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:55 2005CHROMAT_FILE: MSMg01no095_m13.g1 PHD_FILE: MSMg01no095_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCTTTACCAAAGCATTTAAAATTATAGTTTGGAAACCAAAGACTG
TGTGGTCCACAGTGATTAACTGCTGTATGAATGACTCATACTGAGTCAAA
TTGCTTTAAAAACATTTATTTTTGTCCCTCTCTGTGTACAATTTATATAG
GCTCCTCTGTATGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGCTTGTAT
GTGTGTGTTTATGGGTGAGCATGTTTAGATGCCGTTGAAAGCATGTGGAG
ATTAGAGGACAATAACATGTATTGCTTCTCACTTTCCGTGTTGTTTGAGA
CAGAGTTTCTTGTTGTACACCGACCGCTGGATTGTAAGCCCACAGGGTTA
GGCATTCTCTCTCTGCCTCTCTTTTTGATCATCTGCTTATCCCCACACAG
GTATGCCCGTAACAATCTCTGTTGTATCTAGCTTTACATGATTTCTGGAA
ATCACACGCGTGTGTAGTGTGCGTGCGTGTGTGCCAATCTCTTTCCACCT
ACTTATCTTTTTCTTTCTTCCCCATATAATTTTAACATATCATACATTTC
AATTATTCCTTCCCCTTTTTCCTTTACTACATTTTTTCCCCCCTTCTACT
ATTTTTATACCCCTTATTCTTTCCTCCCCCCCTCTCTCTCCCTTCTGTCT
CCCACTTGT
GATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCTCCTGCTGGCCAGGGTTTTCTTCAA
CTGTAAATGGATGTGTGGTGGATCTGTGCTGCAACTCTGAAGCACGGGGA
CCCTTTCAGGAAGCTCTAGTGACCCCTGGCAGTGTCTCTTGACCAGAGCC
CGATCTCCAGGCTAAAGTTGGTGGAGCTCCAGAGATGGCTCTGTTTTATG
GAAAGCACAAAGTTTAAGCCAAACACATTTGCTTACCCATTGGACACCCT
CGAGATCCTGTAATAACTTCTGTCAGTAGGTGAACCAAACATAACTTTAA
AAGGCATGAGTCCCATCTGGTATGGGGAGTTCCATACTCTATAAAGGATG
AAGAGGAGAAGAGTCACCCAGCCATCATTAGTCTCTAAGGACAATTTAGT
TAAGGTCTCTTTTAGGGTTTTATTTATCTTTTCTACCTGTCCTAACTCTG
GGGTCTGTAAGCACAGTGAAGTTTCTGATCAATCCCCATAATATTACCTA
ATCTCTAATTTATCTGGGATACAAATGTAGGTTCATTGTCTGACTATATA
AACTTAGAAAAAAAACAATACCTTGGAAGAATTTCTTTTAGNAGNTTCTT
TGTTCCTGTCTCCACAGNCTCATGATTAGTTTGGGAAAGTTTCACTCCCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_m13.b1 MSMg01no095_m13.b1 CHROMAT_FILE:
MSMg01no095_m13.b1 PHD_FILE: MSMg01no095_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:55 2005
         (257 letters)



>mm_chr8_67579438_67580094
          Length = 657

 Score =  381 bits (197), Expect = e-110
 Identities = 249/287 (86%), Gaps = 34/287 (11%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctttaccaaagcatttaaaattatagtttggaaaccaaagactgtgtggtc 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttctttaggaaagcatttaaaattatagtttggaaaccaaagactgtgtggtc 264

                                                                       
Query: 65  cacagtgattaactgctgtatgaatgactcatactgagtcaaattgctttaaaaacattt 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacagtgattaactgttgtatgaatgactcatactgagtcaaattgctttaaaaacattt 324

                                                                       
Query: 125 atttttgtccctctctgtgtacaatttatataggctcctct--------gtatgtgtgt- 175
           |||||||||||||||||||||||||||||||||||||||||        |||||||||| 
Sbjct: 325 atttttgtccctctctgtgtacaatttatataggctcctctctgtgtgtgtatgtgtgtg 384

                                                                       
Query: 176 -atgtgtgtgtgtgtgtgtgtgtgtg------------------------cttgtatgtg 210
            |||||||||||||||||||||||||                        ||||||||||
Sbjct: 385 tatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgcacatgcgcttgtatgtg 444

                                                          
Query: 211 tgtgtttatgggtgagcatgtttagatgccgttgaaagcatgtggag 257
           |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 tgtgtttatgggtgaggatgtttagatgccgttgaaagcatgtggag 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space:   160704
Effective search space used:   160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)