Query= MSMg01no095_o07.b1 MSMg01no095_o07.b1 CHROMAT_FILE:
MSMg01no095_o07.b1 PHD_FILE: MSMg01no095_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:03 2005
(670 letters)
>mm_chr8_46992865_46993937
Length = 1073
Score = 1006 bits (520), Expect = 0.0
Identities = 640/692 (92%), Gaps = 30/692 (4%)
Strand = Plus / Plus
Query: 7 gaattctttaagtacgtgtgccacattatctcaataaagaaaagggaattctgtgtgtgg 66
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gaattctttaagtacatgtgccacattatctcaataaagaaaagggaattctgtgtgtgg 243
Query: 67 tgcccctgccttcgaaagccttcct------------ttttgaaagtacagccatattta 114
|| ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 244 tgttcctgccttcaaaagccttcctggtctccttcctttttgaaagtacagccatattta 303
Query: 115 aattaataacttggattttgtcatatgaggtatttttaaaagacaaaataatttttgcct 174
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aattaacaacttgggttttgtcatatgaggtatttttaaaagacaaaataatttttgcct 363
Query: 175 agatcagtttaaatgatacgctatagtaactctcaaatgctcattcacctactgatttta 234
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agatcagtttaaatgatacactatagtaactctcaaatgctcattcacctactgatttta 423
Query: 235 tcctctcgcttcttaaaaatgaagggaaattcattaagatatggtggcaacaag-tgtgc 293
||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | |||
Sbjct: 424 tcctctcgcttcttaaaaatggagggaaattcattaagatatggtggcagtaagct-tgc 482
Query: 294 ctggcatgggctggacccttgcttcattcataagtatcagaaaagcaaaaaggtatttat 353
||| ||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct: 483 ctgacatgggctggaccctgggttcattcctaagtatcagaaaagcaaaaaggtatttat 542
Query: 354 agagaagaaagcacacgtagctgcagctagagagaatattaagtccagtaattta--cta 411
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 543 agagaagaaagcacacttagctgcaggtagagagaatattaagtccagtaatttattcta 602
Query: 412 a-caaacagacagacaaa-aaa-aaa--aac------ctcacttctaatacatggtttgg 460
| |||||| ||| ||||| ||| ||| ||| |||| ||||||||||||||||||
Sbjct: 603 aacaaacaaacaaacaaacaaacaaacaaacaaaaaactcatttctaatacatggtttgg 662
Query: 461 gggacctcataaaagaagcagatgaagccagaaaaggagacggccagacactgtttgaat 520
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aggacctcataaaagaagcagatgaagccagaaaaggagacggccagacactgtttgaat 722
Query: 521 tttgaggtatcaaatgaggtgccgtctatggcgtctaacatttgatagatgaacgtagca 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tttgaggtatcaaatgaggtgccgtctatggcgtctaacatttgatagatgaacgtagca 782
Query: 581 tgtgtacctttcagggacaggataggt-gaaccctaaattcctccccttaaccttttt-g 638
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||| |
Sbjct: 783 tgtgtacctttcagggacaggataggcaga-ccctaaattcccccccttaaccttttttg 841
Query: 639 ctaatcctgtagcagataacgatgccttaatt 670
||||||||||||||||||||||||||||||||
Sbjct: 842 ctaatcctgtagcagataacgatgccttaatt 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1073
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1063
Effective search space: 701580
Effective search space used: 701580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_o07.g1 MSMg01no095_o07.g1 CHROMAT_FILE:
MSMg01no095_o07.g1 PHD_FILE: MSMg01no095_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:03 2005
(638 letters)
>mm_chr8_47152860_47153897
Length = 1038
Score = 1203 bits (622), Expect = 0.0
Identities = 634/638 (99%)
Strand = Plus / Minus
Query: 1 tcatctgttgtttctgtggtgtggaggtgcaggcctttaatcacaatattcatgaggcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 tcatctgttgtttctgtggtgtggaggtgcaggcctttaatcacaatattcatgaggcag 917
Query: 61 gtgactatctgtaccagtgcggtcttcaaagcaagtttcaggacagccagggctacatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 gtgactatctgtaccagtgcggtcttcaaagcaagtttcaggacagccagggctacatag 857
Query: 121 tgaaaacctacttcaaaactaaaattaagttcaaataaactaaaaggcagcacatcagac 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 856 tgaaaacctacttcaaaactaaaattaagttcaaataaactaaatggcagcacatcagac 797
Query: 181 actggcctggctcggactgttctgtttctcgtctcctgactgactactattcctcttatt 240
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 796 actggcctggctcggactgttctgtttcttgtctcctgactgacttctattcctcttatt 737
Query: 241 caaggtaaggaatcagctgccatgaaaactgatctcttgagggccaggaacatgaaaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 caaggtaaggaatcagctgccatgaaaactgatctcttgagggccaggaacatgaaaagg 677
Query: 301 tacattaaccagctgactgtggcaaagaagcagtgtgagaagagaatccgaatcctggga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tacattaaccagctgactgtggcaaagaagcagtgtgagaagagaatccgaatcctggga 617
Query: 361 ggtcctgcctatgaccagcaagaggatggagcctcggacgaaggggaagggcctcagagc 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 616 ggtcctgcctatgaccagcaagaggatggagcctcggatgaaggggaagggcctcagagc 557
Query: 421 caaaaggtaaatcctgcagctttttgtttggacataccagttattataaacacagtgtga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 caaaaggtaaatcctgcagctttttgtttggacataccagttattataaacacagtgtga 497
Query: 481 gcacaagcatgttattgaaccactttggcatttgagacatgtcccattgttacagactca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gcacaagcatgttattgaaccactttggcatttgagacatgtcccattgttacagactca 437
Query: 541 cgctgttggcttcatgagtgaaaagccatgtgactgcgtgtgcttgaattgtgtaaatgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cgctgttggcttcatgagtgaaaagccatgtgactgcgtgtgcttgaattgtgtaaatgg 377
Query: 601 cagttgatgataggcaggtgcgtgtgtatatgtgagca 638
||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cagttgatgataggcaggtgcgtgtgtatatgtgagca 339
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
