BAC Information

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BAC

Clone NameMSMg01-096D11
Chromosome8 (Build37)
Map Location 43,769,933 - 43,770,433
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671994, Zfp353, EG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096D11.T7 (MSMg01no096_d11.b1)MSMg01-096D11.TJ (MSMg01no096_d11.g1)
ACCAG312945AG312946
length720743
length of high quality
(start - end)
470 (62 - 531)501 (71 - 571)
definitionCHROMAT_FILE: MSMg01no096_d11.b1 PHD_FILE: MSMg01no096_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:29 2005CHROMAT_FILE: MSMg01no096_d11.g1 PHD_FILE: MSMg01no096_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:29 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCGGCCGCTATACGACTCCTATAGTGCAGAGGATCCGCGGAATTCTTTGT
TCATTTCCGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTAT
TGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCAT
TTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAA
TTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTA
TAAGTTTCAGTGTTTCTGGCTTTATGTGAAGTTCCTTGATCCACTTAGAT
TTGACCTTACCCCAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACA
CGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCT
TCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTG
TGTGCCTTCATTTCTGGATCTTCTATTCTATTCCATTGGCCTACTTGTCT
GTCTCTATATCAGTATCATGCAGCTTTTATCACAATTGCTCCGTATAAAA
GTTTTATTCTTGGCATGCTGATTCCGTCTTAAGGTCTTTTATCCTTGATA
TAACTTTTTGTTATTCTATC
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCGCCATTCCTAGAGACACCTACTGTGTATGTGTTCT
AGGCCAAGTTTTGAGACACTGTGTGATTTAGCAACATTCTTGTTTTTCAG
CATTGCGTACATTTCTGTGTTTTCTTTCTTCATCAACAGATTCTATGGAC
AATGCTATTTTAGGTTTCAAACTCACAAAGCTTAAACACTCACCTTAAGA
ACTATCTTCAAAGTTCTTAAATACGTTTAATACTCTTTTCTGATTCTTCA
TAAAAATTGTAAGTATTTAGGTAGCATTTTAAGGAATATTTCATTAAGTG
TACATTATTAGAAGAGTTAATATTACATATTCTATTTCTAGGTGTATCAG
GAGTCATGAGTTAGAGGCAGGCGCCTTTTCAAGCAAACTTAGACTAATCA
TTCAGTCTTGGAAATAAAATGGTGCTTCATATGTTATATATAAAAAGGAT
TTATTACCTTCATAGCCTCTTAATACTTTATATCTTACTTACCTCAAGTA
TAACCTCATTCAGAAGCCCTTTGGCCTTAATAAATAATTTAATCTATTAT
CTCAGAAATGAATTTAAGTCAATCCTTTGACAGTTAAGATAAGGCAATGG
TTGTATTAAAAGAATGGTGTCACTGAGTGTCACATCCGTGCTACAGAGTT
ACGTGTGCCCAGAAATAATCACCGCTGATTTCCATTCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_d11.g1 MSMg01no096_d11.g1 CHROMAT_FILE:
MSMg01no096_d11.g1 PHD_FILE: MSMg01no096_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:29 2005
         (501 letters)



>mm_chr8_43769733_43770633
          Length = 901

 Score =  953 bits (493), Expect = 0.0
 Identities = 499/501 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctagagacacctactgtgtatgtgttctaggccaagttttgagacactgtgtgattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tcctagagacacctactgtgtatgtgttctaggccaagttttgagacactgtgtgattta 642

                                                                       
Query: 61  gcaacattcttgtttttcagcattgcgtacatttctgtgttttctttcttcatcaacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gcaacattcttgtttttcagcattgcgtacatttctgtgttttctttcttcatcaacaga 582

                                                                       
Query: 121 ttctatggacaatgctattttaggtttcaaactcacaaagcttaaacactcaccttaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ttctatggacaatgctattttaggtttcaaactcacaaagcttaaacactcaccttaaga 522

                                                                       
Query: 181 actatcttcaaagttcttaaatacgtttaatactcttttctgattcttcataaaaattgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 actatcttcaaagttcttaaatacgtttaatactcttttctgattcttcataaaaattgt 462

                                                                       
Query: 241 aagtatttaggtagcattttaaggaatatttcattaagtgtacattattagaagagttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aagtatttaggtagcattttaaggaatatttcattaagtgtacattattagaagagttaa 402

                                                                       
Query: 301 tattacatattctatttctaggtgtatcaggagtcatgagttagaggcaggcgccttttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 401 tattacatattctatttctaggtgtatcaggagtcatgagttagaggcaggtgtcttttc 342

                                                                       
Query: 361 aagcaaacttagactaatcattcagtcttggaaataaaatggtgcttcatatgttatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aagcaaacttagactaatcattcagtcttggaaataaaatggtgcttcatatgttatata 282

                                                                       
Query: 421 taaaaaggatttattaccttcatagcctcttaatactttatatcttacttacctcaagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 taaaaaggatttattaccttcatagcctcttaatactttatatcttacttacctcaagta 222

                                
Query: 481 taacctcattcagaagccctt 501
           |||||||||||||||||||||
Sbjct: 221 taacctcattcagaagccctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)