Query= MSMg01no097_a02.b1 MSMg01no097_a02.b1 CHROMAT_FILE:
MSMg01no097_a02.b1 PHD_FILE: MSMg01no097_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:35 2005
(645 letters)
>mm_chr8_60020576_60021621
Length = 1046
Score = 1052 bits (544), Expect = 0.0
Identities = 565/576 (98%), Gaps = 8/576 (1%)
Strand = Plus / Minus
Query: 5 gaattcacattgtctcctcgaacagctttcacccaaaacgcaagctccgctaatgtgaat 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gaattcacattggctcctcgaacagctttcacccaaaacgcaagctccgctaatgtgaat 517
Query: 65 ctgtgaatcggactctttcattcgggaaacagaaatctgttcttatcaatgaagcctaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ctgtgaatcggactctttcattcgggaaacagaaatctgttcttatcaatgaagcctaag 457
Query: 125 caggaaaggaagaaacaaccctttcctgctgtcctaggagaccaaacgacagagtgcatt 184
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 456 caggaagggaagaaacaaccctttcctgctgtcctaggagaccaaacgacagagtgtatt 397
Query: 185 ctgtacattcaaaccacataaactgtggacagctccagacttgcaagtggcccccttgaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctgtacattcaaaccacataaactgtggacagctccagacttgcaagtggcccccttgaa 337
Query: 245 gtcttgggtgcagcattcaacggggaaggacacaccagcaagaggatgttgagttct-cc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 336 gtcttgggtgcagcattcaacggggaaggacacaccagcaagaggatgttgagttctccc 277
Query: 304 ccctttgttttgtatgctaaatctctgatactaattttgtatcagttaaatgtgatgaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ccctttgttttgtatgctaaatctctgatactaattttgtatcagttaaatgtgatgaat 217
Query: 364 acaaaa-------aaaaaaacccactttagaaaacgttgcatagaatcctttgttgcttg 416
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 acaaaaaaaaaacaaaaaaacccactttagaaaacgttgcatagaatcctttgttgcttg 157
Query: 417 gttctcaaaagattgcttgattaacagaaagctccatccccatgttggcttgtggctctt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gttctcaaaagattgcttgattaacagaaagctccatccccatgttggcttgtggctctt 97
Query: 477 caaacagaatgatcgacttcacgatctccttttgatcttctaattgaaacattttacagg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 caaacagaatgatcgacttcacgatctccttttgatcttctaattgaaacattttacagg 37
Query: 537 ctttcaaaaagaaaaaagtggcccccaaatgaaatg 572
||||||||||||||||||||||||||||||||||||
Sbjct: 36 ctttcaaaaagaaaaaagtggcccccaaatgaaatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no097_a02.g1 MSMg01no097_a02.g1 CHROMAT_FILE:
MSMg01no097_a02.g1 PHD_FILE: MSMg01no097_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:35 2005
(530 letters)
>mm_chr8_59965143_59966072
Length = 930
Score = 975 bits (504), Expect = 0.0
Identities = 521/530 (98%), Gaps = 6/530 (1%)
Strand = Plus / Plus
Query: 1 tctgaaacctcatagctggccaaaacagcagacgtgcataaagacagaaaaagaaatccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaaacctcatagctggccaaaacagcagacgtgcataaagacagaaaaagaaatccc 260
Query: 61 gatggctgccgagagggctgtaaaaccgcagaggcttatttgcagccttggttcggagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatggctgccgagagggctgtaaaaccgcagaggcttatttgcagccttggttcggagca 320
Query: 121 gctgcccgaagagctgacaccgcaaacaacgtttacaaccatctatctccctgtaaggca 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gctgcccgaagagctgacaccgcaaacaacgtttacaatcatctatctccctgtaaggca 380
Query: 181 actggtgagctcagcttgcttgtctgtgttcaagagaaagagaacaacgaagaggaaaga 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 actggtgagctcagcttgcttgtctgtgttcaagagaaagagaacaacgaggaggaaaga 440
Query: 241 aaaaaagaaaagacaaaaaggaaaaaaagagagagagagagagagagaattgtggggtcc 300
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 aaaaaagaaaagacaaaaaggaaaaaaagagagagagagaga------attgtggggtcc 494
Query: 301 agccagactctactttccctagaggagcgaagctgctccctagggcagacaccggctctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 agccagactctactttccctagaggagcgaagctgctccctagggcagacaccggctctg 554
Query: 361 gcagcaaaacaaaggcgcctccattccagaagggactgcccggctgcgagaaaactactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gcagcaaaacaaaggcgcctccattccagaagggactgcccggctgcgagaaaactactc 614
Query: 421 cgggccctcggtgctgcggtcccctttgtttcgtttccagatcgcagcacaggaggaaga 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 615 cgggccctcggtgctgcggtcccctttgtttcgtttccagatcgcagcaaaggaggaaga 674
Query: 481 gggaagcctggcgtgggagacacgcgaggcagcgggagtccgggcgaggg 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gggaagcctggcgtgggagacacgcgaggcagcgggagtccgggcgaggg 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
