BAC Information

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BAC

Clone NameMSMg01-097E18
Chromosome8 (Build37)
Map Location 22,903,090 - 22,903,375
singlet/doubletsinglet
Overlap geneDefb1
Upstream geneLOC100041654, EG574083, AY761185, Defcr21, LOC100038926, Defcr23, LOC100041688, Defcr25, LOC626605, LOC634825, LOC100040619, LOC100038927, Defcr22, Defcr-rs7, LOC100041759, LOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739
Downstream geneDefb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097E18.T7 (MSMg01no097_e18.b1)MSMg01-097E18.TJ (MSMg01no097_e18.g1)
ACCAG313763AG313764
length764762
length of high quality
(start - end)
112 (98 - 209)286 (203 - 488)
definitionCHROMAT_FILE: MSMg01no097_e18.b1 PHD_FILE: MSMg01no097_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:59 2005CHROMAT_FILE: MSMg01no097_e18.g1 PHD_FILE: MSMg01no097_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAAAAAAAGGAAAAGGGGAAAAAAACAAAGAAGGGTGAAACAAAATGACA
AAAAGGAATCAAAATTGCGGCGCTAATACGATCCTATTTCGAGAGGACCG
CGGAATTCTTTGTTTTTCCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
ATTCTGAAGTCCACCTTCTTGAGTCCTTTATATATGTTGAATATTAGTCC
CCTATCTGATTGTAACTAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTGTGGATCTTACAGCGCAAGCCATTGCTGT
TCTGTTCAGGAATTTTTCCCCTGTGTTTGTATCTTCAAGGCGTTTCCCCA
CTTTCTCCTCTATTATTTTGGCAGCCCCCGGTTCTATGTGTGGTTCCTTG
ATCCACTTAGACTTTATCTTACCACAAGGAGATAAGTATGGATCGATTCG
GATTCTTCCACACGATTGGGGCCAGGTGTGCCAAAACCTGGTTGTTAAAA
AAGAGGTCTTACTTGGGGGTGGATGGATTTAACCCACTTGTCAAACATCC
GGCGACCATAAATGTGAAAAAATCATATCAGAGGGTTTCAAAATCGGGGA
AAAAACACCGCATAGGGGGTGTGGACAAAGGGGCAACCAAAAATTTTATC
CCTTTGGGTGGGGTTGGGTTTTTTTAAAAACAGAGGGGGAAAAATAAAAA
ACACCAAAAGGGGG
AAAAACAAAGAAACGGGGAGGGGGGGAAGGGGAAAAAGACACCGGGACAA
GGGACGATGACAAGATAGGCCTGACGGCCGCCTGGCCTCCAAATTTAGGT
GAACTATAGAAGTATCCCCGGAATTCAAAGATAAGTGAAATAGAAAAGAT
GATTGTGAGATTTAAATGAGAAACTCACCAAGTTGAAAGAAACCTTTAGC
AAATTCTAAATGTAAACCATGGAAATAAAACAAATATAGAGAATCCAGTG
AAGATCATCATCCCAGACTCAATCAGTCACAAGATAGACTATAAGGAAAA
TCATATTTGACAAACCTTAATTTTTCAGGTAATGATAGAAAGACATAACA
GCTAAAGTAAATGGAAATCTATGAATTGTAAATGAACATTACCAAATCTA
GAGAGAGGCTGTCTACTTTAGAAGAACAGACTATTCGAAAATAGACATGA
CCCATGAAAAGATGATCCTTGACAAATAATACTTAAGGTGATTTTAATAT
AAGGCAAACAAAGACGGCTGAAAACTGCACACACAAATGACAGGTTACCT
ATGAAGGCCCATTCTCCAGAATTACAACAACAGGGGTCAGGACAAACATT
AAAGGGCAAAACAGACACAGGACATAGGGGGGAACATTTCCATCCGCTAG
AAAAATATAAGGTAAACATCACCTAAAACAGTGTCTGACTGCTGTAAAAC
CATTGCGGGGGATAACTGGAAACCGGCTATATCCTTAGGAATTGGATTGA
AAAATAGGCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_e18.g1 MSMg01no097_e18.g1 CHROMAT_FILE:
MSMg01no097_e18.g1 PHD_FILE: MSMg01no097_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:59 2005
         (286 letters)



>mm_chr8_22902890_22903575
          Length = 686

 Score =  499 bits (258), Expect = e-146
 Identities = 279/286 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctaaatgtaaaccatggaaataaaacaaatatagagaatccagtgaagatcatcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 attctaaatgtaaaccatggaaataaaacaaatatagagaatccagtgaagatcatcatc 427

                                                                       
Query: 61  ccagactcaatcagtcacaagatagactataaggaaaatcatatttgacaaaccttaatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 426 ccagactcaatcagtcacaagatagactataaggaaaatcatatttgacaaagcttaatt 367

                                                                       
Query: 121 tttcaggtaatgatagaaagacataacagctaaagtaaatggaaatctatgaattgtaaa 180
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 366 tttcaggtaatgatagaaagagataacagctaaagtaaatggaaatctatgaattgtaga 307

                                                                       
Query: 181 tgaacattaccaaatctagagagaggctgtctactttagaagaacagactattcgaaaat 240
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 306 tgaacattaccaaatctagagagagactgtctactttagaagaacagactattcaaaaat 247

                                                         
Query: 241 agacatgacccatgaaaagatgatccttgacaaataatacttaagg 286
           ||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 246 agacatgacccatgaaacgatgatccttgacaaataaaacttaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)