BAC Information

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BAC

Clone NameMSMg01-097M17
Chromosome8 (Build37)
Map Location 123,315,986 - 123,316,231
singlet/doubletsinglet
Overlap genenone
Upstream geneCotl1, BC025816, Usp10, Crispld2, Zdhhc7, 6430548M08Rik, 1700120B06Rik, Gse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8
Downstream geneLOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1, 1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097M17.T7 (MSMg01no097_m17.b1)MSMg01-097M17.TJ (MSMg01no097_m17.g1)
ACCAG314137AG314138
length686795
length of high quality
(start - end)
59 (127 - 185)245 (127 - 371)
definitionCHROMAT_FILE: MSMg01no097_m17.b1 PHD_FILE: MSMg01no097_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:39 2005CHROMAT_FILE: MSMg01no097_m17.g1 PHD_FILE: MSMg01no097_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGCAGATCCCGAGGTGCGNGGATTNNTCTNTTTCCATCACNGAGAGGAG
GATNTGGAAGAATAATNTGAGAAAATTTTGATGGGAATAGCCACAGGTGG
GTTTCTTCTGGATGTTAGAGGTAANACCTGCAGCTACCTTATTGAGTAAC
CATGACGATTATCCCTCTCCCCTCTGAGGAATGTGGGCTATGCAAGGCAC
CCCTTTAGTAACAGTGCTCTCTCTAAATGCTTCAAATCCCAGGAAAAATA
TACAGGTGCCCAACAGAGGCTGTGGGGCTTCACTCATTTTTTTTTGTGTC
CCCAGGAGGGAGCAAAGGATNAGGAATATTAGATGACCCCCAGNACGNNC
CCCTGTGGAAGGTATTTAATATTAAGTGTAGTGATGGTTTTAGAATTAGT
TAAAACCTATGGTGGGAGGAGTGATATTGATATTATTAGTTAGAGATATA
TAGATAATATTTAAAAAAATAATAGTATAAATATTTTTTTATAGGAGTGG
TTTGATATATTTTTTTAGAAAGTAGATATTATATGTATTATGTATAAATA
CATCTTGATATACCCGGTTAGCTATCTCCCCATCCCCTGTTTGCCCAAAT
CGTATAGAAAAATACACACTTTAAACCCTGTTCTTTTGTTATTTATCCTA
CCCCTTTGTAACAATGACACATAATTCATCCTGCCG
NCAAACTCAACAAATAGGGGGGTGGGGTTTCTGGCCCTTTCNNCCTTCCC
CCNNCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCAGGGGCTGTGCTGGGCCTG
CAGTAGGGACCTGATGCATTTAGGAGGACAGAGAAGACAGAACTGTAGTG
TGAACTGCCCCTCCGCCACGCCCCCATACTCACACTACTTTGTACCTGGC
CTCCCTCCTGAAAAGGGCTGGACTCCCCGTGAGGCTGAAGTCAGTTTGTG
CTTCCTGAGTCATGTCCAGGCATATCATGTGGTTGAGTCCCCCAAGCCCT
TGGCCCACCCTTTGCTGAGCCTTTCCCAAGTCATTGCTCAAATTGGAGAA
GGCTGTGTCTGTGTTCGTACCCCCCCGCCACCTTAGCTTTGAAAGTCGGG
AGGCATTGTACAAGAACGCCGGCCTTCGTTTTCCCCCCTCTCCGCGCGCA
AATCTTTCCCCTCGATTTGCCTTGCGTTGCCTTGCCATCATCTTGCATCC
CGTGTCCAGGACTGTTGACATCTGCCTGCATAGATAGGTATCTTTGTCCC
GACAGGTGTTCGCCCCTGATACTTCCCCACATTATTTATGCTACCCGCGT
TTACATAACAATGCATCGCTTTTGGCCGCGGTACTAACCCCCCCTCCGGT
AATTATGGTTCCCACTTTTACCCAATCGTCCTCGCCCTCCTGAACCGTAT
CCCGTACAGTTTGACTTTGGCCACCCCCTTCCCGATCTGCGTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_m17.g1 MSMg01no097_m17.g1 CHROMAT_FILE:
MSMg01no097_m17.g1 PHD_FILE: MSMg01no097_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:39 2005
         (245 letters)



>mm_chr8_123315786_123316431
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%), Gaps = 1/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcca-ggggctgtgctgggcctgcagtagggacctgatgcatttaggaggacagagaa 59
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctccaaggggctgtgctgggcctgcagtagggacctgatgcatttaggaggacagagaa 260

                                                                       
Query: 60  gacagaactgtagtgtgaactgcccctccgccacgcccccatactcacactactttgtac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacagaactgtagtgtgaactgcccctccgccacgcccccatactcacactactttgtac 320

                                                                       
Query: 120 ctggcctccctcctgaaaagggctggactccccgtgaggctgaagtcagtttgtgcttcc 179
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ctggcctccctcctgaaaagggctggactccccgtgaggctgaggtcagtttgtgcttcc 380

                                                                       
Query: 180 tgagtcatgtccaggcatatcatgtggttgagtcccccaagcccttggcccaccctttgc 239
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtcatgtccaggcatatcatgtggctgagtcccccaagcccttggcccaccctttgc 440

                 
Query: 240 tgagcc 245
           ||||||
Sbjct: 441 tgagcc 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 646
Length adjustment: 9
Effective length of query: 236
Effective length of database: 637
Effective search space:   150332
Effective search space used:   150332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)