BAC Information

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BAC

Clone NameMSMg01-097O09
Chromosome8 (Build37)
Map Location 52,341,289 - 52,341,439
singlet/doubletsinglet
Overlap geneLOC667517
Upstream geneLOC100039954, LOC100039966
Downstream geneLOC623872, LOC100040220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097O09.T7 (MSMg01no097_o09.b1)MSMg01-097O09.TJ (MSMg01no097_o09.g1)
ACCAG314214AG314215
length946708
length of high quality
(start - end)
---170 (46 - 215)
definitionCHROMAT_FILE: MSMg01no097_o09.b1 PHD_FILE: MSMg01no097_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:48 2005CHROMAT_FILE: MSMg01no097_o09.g1 PHD_FILE: MSMg01no097_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCACCCCCCCACCAACCACCCCACCACCCCCCCCCCCACCAANCC
CCCCCCACTCCTCCCCCCACACCTCCATTTTTCCCCTCTCCTTCTCTCCT
TTCTTCCCCCCTCTTCCCCCCCTTCAACTCCCCATCCTCCCCTCCGTCCA
CATTTATGGTATATTGGGAGAAGCGCGTGTAAATCCCTAACCCCACGCTT
CTTCTCGTTTTCTTTCCGGGAGGGGCGTGGCGTACCTTTTTTTTTTTGCC
TATTTCGTTCGCCGCTTTTCCTTTTCCGCCCTTTCCTTTCCGGCCTCTAT
GTCCTATCACTTCTGTTTGGAACTTTGTCCGCCTCCCCCCCGCGTGGTTT
TCCCCACCCCAGTGGTGGTCGCTCGCTCCCGTCGCTCGTTGCGTTGTCAC
GGGTCGGGCGCTATCCGCCACCTCCTCTTTTCCCCTTTTTTCCTTATCTC
GTGTATGTTTTTCTAGGCCCCGCCACGGTGTCGGGTTTGTTGGCCGTTCG
ACCCGGGCCGCCCTTGGAAAGGGAACTACTTGTGGCTGTTTGGTTGGCCG
TTTCCCGGTCTGGGGCCGAACGCGTGGGGGTAAACCTACCTCCATGCGGG
GGGTGATTCTTTGTTGTATGGTTACCCCCCCGGGGGGGGGGTGCCCGTGT
GTGTTGCATTAAAAAGGCGGGGCGCCATATAATAATATGGGGGGGGCGGG
CGCGGGGCATAAATAGGAACAACCCTATGGGTGGAGCGGGGTTCCGCCCC
CACCCTGTTACGGGGCTCTTGTGGCGCGCGCGGAATATACACCCCCGTGG
TCTTGTGTGGGGTTGATCACTATTCCTTACTTCCCTCTGCGGGCGTGTCG
TTTTTTCCCCGAATCCCTTTGCGGGGGTGGGTGTCGTCCACGAATCATGG
TTTTATACTGGGGGGCATAAACATACACCTNTCCTTGCCCCCCCCN
GATGCAGTGGGAGGCTGGCGGCGCCTGTTCCCAAAGTGAGGTGACCTATA
GAATTTCCGCGGAATTCCAGCATCCAAAACAGGAAAGGGTAGACATAATT
CCTGTACTAACATGGACCTGATGATTCAAATAAGTATTAGGTTAAGCTGT
TCTTAGAACTAGAGATACCACTCTTGATGCTCTTGCCTGATTCATCAGGT
TTTCTGAAGGANCACTATNTNTNNGCCAGCCTCCTCCNATNTAGACTTTT
NGGCAAAAATAGGACTAACAGCTCATCAATTTAANGAGAGAGAAAGTTCT
TAAAGCCATGCTGGAGGAAAAATCTCTTTTTAACCCCCCTTACCGGGAAA
CCCCCCGATTTTTTTTTAAATATTTACCGGGCACCAACGCGCCCCNNNNN
AAGGGAAAAGGTCTTTTTATTTTTTAAAAAAAAAAAAAAAGCGGTATCTC
CCTTCTTTCTGGGGGGACCTTTTTTTTTTTNNNNNCCCNNNNNNNNNNAA
GGGGATGGAGAGTAGANNNNNNNNACAGTTAGATACAGAAGAAGACCCNN
TAGGAGGGGTNGCNNNNCNNNNNTGGGCCCGCTGGGCCCCCTCCTTTTGT
TTTTAGGGAAAAAANNNNNCAATTACTCCGCGGGCCCCCCCCCNCCNNCC
CNCNNNTTTTCAATAAACTTTTTTTCTTNNNNNTTTNTNANNACACCCAT
CCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_o09.g1 MSMg01no097_o09.g1 CHROMAT_FILE:
MSMg01no097_o09.g1 PHD_FILE: MSMg01no097_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:48 2005
         (170 letters)



>mm_chr8_52341073_52341643
          Length = 571

 Score =  284 bits (147), Expect = 2e-81
 Identities = 150/151 (99%), Gaps = 1/151 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattccagcatcca-aaacaggaaagggtagacataattcctgtactaacatggacctg 75
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaattccagcatccacaaacaggaaagggtagacataattcctgtactaacatggacctg 308

                                                                       
Query: 76  atgattcaaataagtattaggttaagctgttcttagaactagagataccactcttgatgc 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atgattcaaataagtattaggttaagctgttcttagaactagagataccactcttgatgc 248

                                          
Query: 136 tcttgcctgattcatcaggttttctgaagga 166
           |||||||||||||||||||||||||||||||
Sbjct: 247 tcttgcctgattcatcaggttttctgaagga 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 571
Length adjustment: 8
Effective length of query: 162
Effective length of database: 563
Effective search space:    91206
Effective search space used:    91206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)