BAC Information

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BAC

Clone NameMSMg01-098C16
Chromosome8 (Build37)
Map Location 123,587,740 - 123,587,839
singlet/doubletsinglet
Overlap geneLOC100042333
Upstream geneZdhhc7, 6430548M08Rik, 1700120B06Rik, Gse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8
Downstream geneFoxf1a, Mthfsd, Foxc2, Foxl1, 1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098C16.T7 (MSMg01no098_c16.b1)MSMg01-098C16.TJ (MSMg01no098_c16.g1)
ACCAG314416AG314417
length762790
length of high quality
(start - end)
98 (272 - 369)100 (189 - 288)
definitionCHROMAT_FILE: MSMg01no098_c16.b1 PHD_FILE: MSMg01no098_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:11 2005CHROMAT_FILE: MSMg01no098_c16.g1 PHD_FILE: MSMg01no098_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTTCCCNCTCNNCCTCCCCTTTTCCCCTTCTTCCNCTTATCTCCC
CTTTTACTCTATATTTGCGGCGCTATACGACTCCTATCCGGAGAGATCCG
CGGAATTCAGTTTCCCTGAAGAGGGCACTGGATTCATTATATAGAGCACC
CACCTGGGCACTCACATTGCCACCGCACTGAATAGACTGGGCGTGGTGGC
AGGCTCATGTCATCCCAGGGGAGGGCTGAAGAATCAGGTGTCCTGTGTCA
CCCTCTGCCACATAGTGAGGCTAAGGTCAGCACTGACGACACTAGACTTT
GTTTTGAAAAATAAAACAACAAAACAACCAACCTACCAAATAATATCAAC
AACAACAACAACAAAAGTCTATATCAATAACTAACACTCAAACACTAACA
AAATTACTCTATTTATCCCATAACTGCTCAACTTCATTGACTATGCGGTC
ATATTGCTATTTGACTCTTTCTTACTTGCAAGAATCTTATCACCGGCCTG
AAACAATATTTCTTTAAATGAAAGTGAATTGATGTTAATAAAAATTAAAA
CTCATGGTCCACTTATTAATAATACCTCCCCTTCCCTCCCCCCCCTTTTT
TTTTTGACTATTATCCCCGCTCCAACTCTATTTTCTTTCACGTGGTTCTT
ACATCCTCTCTATTTCCCCTTCCGCATTATTTTTTGCTTTCCTCTGTATC
CCTTTTCCCTTCCTTTTGTTATATTGTCCCTTCTCCCACCCATCCGCCGT
TATTTTCCCTTC
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNCCCCCCCCCCNNNCNCTG
GTATTATTTCTTCGATGATATGTGTAGGCCTGGCGGCCGCCTTTCAAACA
AGTTTAGGTGACCTATAGATTTCCCCGAGGAATTCCTGTGTTCCACCCTG
CTGGCTTTCTCCAGGCACAGGCTGTTGTCCCCCTGAGGGAGAGAGTCTGT
GCTGCATATCAGTCTGGGAAACGTGAGTCTCCGGCAGAATTCAGTGCTGG
GGAAACCACTGCGAAATTACTCCCTTCCTTCTCTGGAAGCCAGTGGACAA
GAGGGCTATTGTGTGGGGTCAGAGCCCTCCTGTCACAAAGGGTCCTTTCA
TAGGAGTTGACGGGGTGCGCGGGACCCTTTTCTGTTGTGCTTCTGGGCAC
ATGCCCTGTCTTCCATGTGTTTTTGTGTACACATGCCCACATGTGCGCAT
GTATGCATGTGCCCATGTGTGTGCATCGTTGAAAAGAGTACATGTGTGCA
TAATTGTATGTGAATCCCTGTGTGAACGTGTGTGTTTTTGTATTTTTCTG
CCCCTTATACATTGTTTTCCCGCGCTTTTGCCTTGCCGTGCTTATATGTG
CTATTTCACCGTATGTTTCTTTTATTCCCCTTTTTCCCCCCGTTTCTTTT
ATATTTTTTCTTTATGCTTATTGAATTATTTTTTCGGTGTATTCTTATTG
TACACGCCTATTTTGTCCCTTGGTGCTGGTGCCTTTTTTCTCCTTTTTCG
CCTGTTTGTCTGATGGATTTTTTACTTTATGTGACTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_c16.g1 MSMg01no098_c16.g1 CHROMAT_FILE:
MSMg01no098_c16.g1 PHD_FILE: MSMg01no098_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:11 2005
         (100 letters)



>mm_chr8_123587540_123588039
          Length = 500

 Score =  170 bits (88), Expect = 2e-47
 Identities = 97/100 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagagagtctgtgctgcatatcagtctgggaaacgtgagtctccggcagaattcagtgct 60
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 300 gagagagtctgtgctgcagatcagtctgggaaacgtgagtctccggcagaattcagcgct 241

                                                   
Query: 61  ggggaaaccactgcgaaattactcccttccttctctggaa 100
           ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 240 ggggaaaccgctgcgaaattactcccttccttctctggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 500
Length adjustment: 8
Effective length of query: 92
Effective length of database: 492
Effective search space:    45264
Effective search space used:    45264
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)