BAC Information

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BAC

Clone NameMSMg01-098C19
Chromosome8 (Build37)
Map Location 31,738,465 - 31,738,952
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628189
Downstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098C19.T7 (MSMg01no098_c19.b1)MSMg01-098C19.TJ (MSMg01no098_c19.g1)
ACCAG314422AG314423
length689702
length of high quality
(start - end)
507 (36 - 542)488 (79 - 566)
definitionCHROMAT_FILE: MSMg01no098_c19.b1 PHD_FILE: MSMg01no098_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:11 2005CHROMAT_FILE: MSMg01no098_c19.g1 PHD_FILE: MSMg01no098_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTAGCTCTGTGCCCCATTTTTATTTTAATTTTTTTATTAGGTATTTTCCT
CTTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCACCCCTACAA
TCCCCTACCCAACCACTCCCCCTTTTTGGCCCTGGCGTTCCCTGTACTGG
GGCATATAAAGTTTCCAAGTCCAATGGGTCTCTATTTGCAGTGATGGCCG
ACTAGGCCATCTCTTGATACATATGCAGCTAGAGACAAGAGCTCCGGGGT
ACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTA
GCTCCTTGGGTACTTTCTCTAGCTCCTCCACTGGGGGCCCTGTGACCCAT
CCAATAGCTGACTGTGATCATACACTTCTGTGTTTGCTAGGCCCCGGCAG
AGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCAGCAAAATCTTGCTA
GTGTATGCAATGGTGTCAGCGTTTGGAAGCTGGTTATGGGATGGAACCCT
GGATATGGCAGACTCTAGATGGTCCATCATTTCATCATAGCTCCAAATTT
TGTCTCTGTAACTCCTTCCATGCGTGTTTTGTTCCCATTTCTAACACGGG
GCAAAGTGTCCCCACTTTGGTCTTCGGTCTTCTTGAATT
CTCATTATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCCTCATCTGCCTCTTAGCC
AACCTTAAAGTGAAAACATGGCTGTCTCACATTCTGAGTACCAAGAACTG
TCATGTCTCTCCCTCTCTGGTAGATTAAAATCCCTCTGCAACCATATGAC
AAAATAAGGAAAGGTCATCCAGAGACTGCCCCACCTGGGGATCCATTCCA
CATGCAGACACCAAACCCACACACTATTGCTGATGCCAAGAAGTGCTTGC
TGACAGTAGCCTGATACAGCTGTCTCCTGAGAGGCTTTGTCAGATCCCGA
CCAATACAGATGCGGATGCTCACAGTCAACTACTGGACTGAGCACAGGGA
CCCCAATGGAAGAGTTAGAGGAAGGACTGGAGGAGCTAAAGGGGTCTTAT
CTGGCATTAATGGGAGGGGAAGCTCTTGGTCCTGTGAGAGTTTGATGCCC
CAGTGTAGAGAAATGCTAGGGGGGTGAGGTAGGAGCAGGTGGGTGAATAC
CTTCATAGAAGCAGGGTAAGGGGGGATAAGATGGGGGGCTGCAGAGGGAA
ACTGGGAAAGGGGATAATATTTGAAATGTAAATAAAATAGATAGATAGAT
AGATAGATAGATAGACAGATAGATAGATAGATAGATAGATAGATCGATAG
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_c19.g1 MSMg01no098_c19.g1 CHROMAT_FILE:
MSMg01no098_c19.g1 PHD_FILE: MSMg01no098_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:12 2005
         (488 letters)



>mm_chr8_31738265_31739152
          Length = 888

 Score =  944 bits (488), Expect = 0.0
 Identities = 488/488 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcctcatctgcctcttagccaaccttaaagtgaaaacatggctgtctcacattctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgcctcatctgcctcttagccaaccttaaagtgaaaacatggctgtctcacattctgag 260

                                                                       
Query: 61  taccaagaactgtcatgtctctccctctctggtagattaaaatccctctgcaaccatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taccaagaactgtcatgtctctccctctctggtagattaaaatccctctgcaaccatatg 320

                                                                       
Query: 121 acaaaataaggaaaggtcatccagagactgccccacctggggatccattccacatgcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaaataaggaaaggtcatccagagactgccccacctggggatccattccacatgcaga 380

                                                                       
Query: 181 caccaaacccacacactattgctgatgccaagaagtgcttgctgacagtagcctgataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caccaaacccacacactattgctgatgccaagaagtgcttgctgacagtagcctgataca 440

                                                                       
Query: 241 gctgtctcctgagaggctttgtcagatcccgaccaatacagatgcggatgctcacagtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgtctcctgagaggctttgtcagatcccgaccaatacagatgcggatgctcacagtca 500

                                                                       
Query: 301 actactggactgagcacagggaccccaatggaagagttagaggaaggactggaggagcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actactggactgagcacagggaccccaatggaagagttagaggaaggactggaggagcta 560

                                                                       
Query: 361 aaggggtcttatctggcattaatgggaggggaagctcttggtcctgtgagagtttgatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggggtcttatctggcattaatgggaggggaagctcttggtcctgtgagagtttgatgc 620

                                                                       
Query: 421 cccagtgtagagaaatgctaggggggtgaggtaggagcaggtgggtgaataccttcatag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccagtgtagagaaatgctaggggggtgaggtaggagcaggtgggtgaataccttcatag 680

                   
Query: 481 aagcaggg 488
           ||||||||
Sbjct: 681 aagcaggg 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)