Query= MSMg01no098_f10.b1 MSMg01no098_f10.b1 CHROMAT_FILE:
MSMg01no098_f10.b1 PHD_FILE: MSMg01no098_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:25 2005
(530 letters)
>mm_chr8_23512912_23513841
Length = 930
Score = 882 bits (456), Expect = 0.0
Identities = 499/522 (95%), Gaps = 15/522 (2%)
Strand = Plus / Plus
Query: 9 gaattccaaggatccctgactatcaacggccagatcccccatgtttaccaagtcactgaa 68
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 209 gaattccaaggagccctgactatcaatggccagatcccccatgtttaccaagtcactgaa 268
Query: 69 aagacctttggcagtgggagtcactcctaccaggactttctaatactattccacgtggtg 128
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 269 aagacctttggcagtgggagtcactcctaccaggacttcctaatactattccacgtggtg 328
Query: 129 atgaagttgcagaggctgcagttgaactgactcattgtctgtagacactttctggaaagt 188
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 329 atgaagttgcagaggctgcagttgaactgactca-------------ctttctggaaagt 375
Query: 189 tggtgtgtctcctgtgagtgtgatagcaatgtcatcctgagtcctgcctgggtcacagaa 248
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 376 tggtgtgtctcctgtgagtgtgatagcaatgtggtcctgagtcctgcctgggtcacagaa 435
Query: 249 ccatttgacaaccagggttctgaactgtataatagtaagaggaggaaaactagctgaaca 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ccatttgacaaccagggttctgaactgtataatagtaagaggaggaaaactagctgaaca 495
Query: 309 ataattagaaacaagcagacttcttggatacatttgcctttccgttctgttgaccacaga 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ataattagaaacaagcagacttcttggatacatttgcctttccgttctgttgaccacaga 555
Query: 369 tgtagtgtgaccatctgtctcattcccctgcctctgtgacttccccacaaaatagactgt 428
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 556 tgtagtgtgaccatctgtctcattctcctgcctctgtgacttccccacaaaatagact-- 613
Query: 429 agcctgacattataagccaaataaacccctttctcccttaagttgccattgtgcacagta 488
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 614 agcctgacattataagccaaataaacccctttctcccttaagttgccgttgtgcacagta 673
Query: 489 tttgtcttactttcattctgttattgtgataagatgatgtca 530
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 674 tttgtcttagtttcattctgttattgtgataagatgatgtca 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_f10.g1 MSMg01no098_f10.g1 CHROMAT_FILE:
MSMg01no098_f10.g1 PHD_FILE: MSMg01no098_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:25 2005
(240 letters)
>mm_chr8_23647014_23647653
Length = 640
Score = 455 bits (235), Expect = e-132
Identities = 238/239 (99%)
Strand = Plus / Minus
Query: 1 tcaggtctggaagcctcatatgcagtgggctgattttctatagggctaagcaagggtctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcaggtctggaagcctcatatgcagtgggctgattttctatagggctaagcaagggtctt 380
Query: 61 aaagggtcttctgttggggaagcttaggtggcagtaacagcagattctactccaccccga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaagggtcttctgttggggaagcttaggtggcagtaacagcagattctactccaccccga 320
Query: 121 cagcaggatggaggtcccaggtctagttagaacagaacagaaggaaatggaatgaagaga 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cagcaggatggaggccccaggtctagttagaacagaacagaaggaaatggaatgaagaga 260
Query: 181 atgcagggagaggagaggagacagacagagagcagggagaccccatggaggggcaatca 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atgcagggagaggagaggagacagacagagagcagggagaccccatggaggggcaatca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
