BAC Information

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BAC

Clone NameMSMg01-098L07
Chromosome8 (Build37)
Map Location 71,435,993 - 71,556,453
singlet/doubletdoublet
Overlap geneLOC100041138
Upstream genePsd3, Sh2d4a, LOC665510, 4732435N03Rik, Ints10, Lpl
Downstream geneSlc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098L07.T7 (MSMg01no098_l07.b1)MSMg01-098L07.TJ (MSMg01no098_l07.g1)
ACCAG314818AG314819
length695685
length of high quality
(start - end)
581 (55 - 635)239 (56 - 294)
definitionCHROMAT_FILE: MSMg01no098_l07.b1 PHD_FILE: MSMg01no098_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:54 2005CHROMAT_FILE: MSMg01no098_l07.g1 PHD_FILE: MSMg01no098_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,435,993 - 71,436,573)(71,556,215 - 71,556,453)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTAT
TCCACGGATACCAAATGAGAACTGAAGTCCAGAAAACCTATAGTACTTGC
AGAGATAATAAATTAACTCATCTGGCAGAAGATGTAACTCAGTTGTTAAG
AGTTCTTGCCTAGAATGTATGGGGTCCTGTATTTGATCCCTAGTGTTGCA
TATACCAGACACCTATCTAAATCATCCTAGTATCCAGGAGACAGAGCAAG
GATGACCAGAAGTTCAGGGTTATCCTCAGTTATATAGCAAGTTTGAGGAT
ATGTACTTGAGACCCTGTCTTTAATTTTTTTTAATAAAACTAGACTTTGA
CGGGATATATTACACAACAGAGAGTTGGGATATATGCTGATGATACACAA
ATATTCCAGCCTTGGAATCTCTTCACTGGTCTCCTCCCATGATCATACCG
TCTAATCTACTTTTACACAGAATCTTCCACACGTGTCTTACAACACACTT
TTCCTAACTCCTAGTTTCAAGTTCTCTCTTCTTTGACTATTCTACATCAG
TCAAGCTAGTCATTCTACTCTAATAGTTCCACAACTGGCAGCGAACTCCA
GTTTGCCCATGTAGCCTTCTCTGCTGACTTTTGTAGTCTCACTTAGATCC
TTAGTCAGCTTTAACCCCGTTTTAATGTTATCTGGACTACAGGGA
GGCGGCCGCCTTTTCAACAAGTTAGGTGACCTATAGAATGACACGAGAAA
TTCAGCTGGACTCAGGCGTTGTTACTGTGGGGGTGGTGACAGCTCCGTGC
AAGTATTTTCCTCAGAAGAACTTCCAGAGAAAAAGGTAGAAGACAGTGAT
CCTGACCTTGTACAGGTCTGGTTATATATGTGTATTAGTCAGGGTTCTCT
AGAGTCACAGAACTTATGGACAGTCTCTAGATAGTAAAGGAATTTATTGA
TGACTTACAGTCGGCAGCCCAATTCCCAACAATTGTTCAGTCGCATTTTT
TTATGGAAGTCCAAGGATCTAGCAGTTACTCAGTCTCACGCAGCAAGCAG
GCGAAGGAACAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCT
CCAGCAGAAGGTGTAGCCCAGATTAAAGGTGTGTTCCACCACACCTTTAA
TCCCAGATGAAAGGTGTAGTCCAGATTAAAGGTGTGTTCCTTAAACTCGG
AGATTCAATCTTCTGGAATCCATAGCCACTATGGCTCAAGATCTCCATAC
CAAGATCCAGATAAGGATCTCCAAACCTCCAGATAAGGGTCACTGGTGAG
CCTTCCAATTCTGGATTGTAGTTCATTCCAAATATAGTCAAGTTGACAAC
CAGGAATAGCCACTACCATATGTGTCATTTTTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_l07.b1 MSMg01no098_l07.b1 CHROMAT_FILE:
MSMg01no098_l07.b1 PHD_FILE: MSMg01no098_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:54 2005
         (581 letters)



>mm_chr8_71435793_71436773
          Length = 981

 Score = 1123 bits (581), Expect = 0.0
 Identities = 581/581 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggataccaaatgagaactgaagtccagaaaacctatagtacttgcagagataataaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cggataccaaatgagaactgaagtccagaaaacctatagtacttgcagagataataaatt 260

                                                                       
Query: 61  aactcatctggcagaagatgtaactcagttgttaagagttcttgcctagaatgtatgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactcatctggcagaagatgtaactcagttgttaagagttcttgcctagaatgtatgggg 320

                                                                       
Query: 121 tcctgtatttgatccctagtgttgcatataccagacacctatctaaatcatcctagtatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctgtatttgatccctagtgttgcatataccagacacctatctaaatcatcctagtatc 380

                                                                       
Query: 181 caggagacagagcaaggatgaccagaagttcagggttatcctcagttatatagcaagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggagacagagcaaggatgaccagaagttcagggttatcctcagttatatagcaagttt 440

                                                                       
Query: 241 gaggatatgtacttgagaccctgtctttaattttttttaataaaactagactttgacggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggatatgtacttgagaccctgtctttaattttttttaataaaactagactttgacggg 500

                                                                       
Query: 301 atatattacacaacagagagttgggatatatgctgatgatacacaaatattccagccttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatattacacaacagagagttgggatatatgctgatgatacacaaatattccagccttg 560

                                                                       
Query: 361 gaatctcttcactggtctcctcccatgatcataccgtctaatctacttttacacagaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaatctcttcactggtctcctcccatgatcataccgtctaatctacttttacacagaatc 620

                                                                       
Query: 421 ttccacacgtgtcttacaacacacttttcctaactcctagtttcaagttctctcttcttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttccacacgtgtcttacaacacacttttcctaactcctagtttcaagttctctcttcttt 680

                                                                       
Query: 481 gactattctacatcagtcaagctagtcattctactctaatagttccacaactggcagcga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gactattctacatcagtcaagctagtcattctactctaatagttccacaactggcagcga 740

                                                    
Query: 541 actccagtttgcccatgtagccttctctgctgacttttgta 581
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actccagtttgcccatgtagccttctctgctgacttttgta 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no098_l07.g1 MSMg01no098_l07.g1 CHROMAT_FILE:
MSMg01no098_l07.g1 PHD_FILE: MSMg01no098_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:54 2005
         (239 letters)



>mm_chr8_71556129_71556767
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggactcaggcgttgttactgtgggggtggtgacagctccgtgcaagtattttcctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctggactcaggcgttgttactgtgggggtggtgacagctccgtgcaagtattttcctcag 266

                                                                       
Query: 61  aagaacttccagagaaaaaggtagaagacagtgatcctgaccttgtacaggtctggttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagaacttccagagaaaaaggtagaagacagtgatcctgaccttgtacaggtctggttat 206

                                                                       
Query: 121 atatgtgtattagtcagggttctctagagtcacagaacttatggacagtctctagatagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atatgtgtattagtcagggttctctagagtcacagaacttatggacagtctctagatagt 146

                                                                      
Query: 181 aaaggaatttattgatgacttacagtcggcagcccaattcccaacaattgttcagtcgc 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 aaaggaatttattgatgacttacagtcggcagcccaattcccaacaattgttcagtcgc 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)