BAC Information

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BAC

Clone NameMSMg01-098M24
Chromosome8 (Build37)
Map Location 42,653,379 - 42,653,723
singlet/doubletsinglet
Overlap genenone
Upstream geneMtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1, Pcm1, Asah1, Frg1
Downstream geneLOC100039376, Gm1815, LOC671994, Zfp353, EG620772, LOC628212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098M24.T7 (MSMg01no098_m24.b1)MSMg01-098M24.TJ (MSMg01no098_m24.g1)
ACCAG314897AG314898
length678691
length of high quality
(start - end)
494 (32 - 525)345 (53 - 397)
definitionCHROMAT_FILE: MSMg01no098_m24.b1 PHD_FILE: MSMg01no098_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:02 2005CHROMAT_FILE: MSMg01no098_m24.g1 PHD_FILE: MSMg01no098_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGATCCGCGGAATTCTCAACTGATCCATACCAAAGGGCTGAGAAGCACT
TGAAAAAATGCTCAACATCCTTAATCATCAGGGACATGCAAATCAAAACA
ACTCTGAGATTACACCTCACACCAGTCAGAATGGCTGGGATCAAAAATTC
AGGTGACAGCAGATGCTGGCCAAGATATGGAGAAAGAGGAACACTCCTCC
ATTGCTGGTGGGATTGCAAGCTGGTACATCCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAACTGGTCATAGTACTACTGCTAGATCCAGCAATACC
TCCCCTGGGCATATACCCAGAATATGCCTCAACTGGTAATAAGGACACAT
GCTCCGCTATGTTCATAGCAGCCCTATTTATAATAGCCAGAAGCTGATAG
AACCCAGATGTCCCTCAACAGAGGAATGGATACAGAATATGTGGTACATT
TACACAATAGAATACTACTCAGCTATTAAAAACCATGAATTTATGAAATT
CTTGGGCAAATGGATGTATCTGGAGGATATCCTGAGTGAGGTAACCCAAT
CACAAAAGAAGTCACTTGATATGCATTCACTGATAAGCGGATATTAGCCC
AGAAACCTAGAATACCCCATATACCACTTCGAATACACAAGAAAATCACG
AAGGAAGACCAACGCTTGGATACTTCAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXACTACATCGTTCTGTTGGATCATTAATTTGTGATTCTCCTGCCTCGGC
CTTCAAGAGTTCAGAGATTAAAGGAATGGGCTACCAGGCCTGGGGGCTGT
TAAAAGCTAAAAACCAGTAACTGGAAGGAACAGGAAGGCTTACTGTGGTA
ATAAAGGTCTGAACTAGACTTTGTTATTCTAAAGTGGGTGCTTCCCTCAC
CAGCACCTCATAGGTGAGAAAAAGGCTACTTTTCTTTAAAAACGTAAATC
TAATTGAGTGTTACCTTTCTATTCTATTCTTTAAAGTTTTGGTTATATCA
TCATTACTGTGAGTATGTGTTTGATATGTGTGCATGTGATTGCGTGTGCC
ATGACATGCATGTGGAGGTCAGAGTACAATTTTGTGGAGCTGCCTCTTGC
CTTCCACCTTTACATGGCTTCTGGGAATGCCATCCAGATCATCAGATTTT
GCAGTAATTGTCTTTACAATGCATTGATCACAATGGCAGGGCTTTTAACT
CCATTAGATAGGAGCGTTTAGATCTTTTTTGTCCACGCCTTTCTCCAAGC
TGGAGTGTACCTCGATTTTGTATGAGCCTACTTCCTGACCTTTCAAAATA
GGTTCAATGTATCCCTGAACCATCCCCTACACACTTGTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_m24.g1 MSMg01no098_m24.g1 CHROMAT_FILE:
MSMg01no098_m24.g1 PHD_FILE: MSMg01no098_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:02 2005
         (345 letters)



>mm_chr8_42653179_42653923
          Length = 745

 Score =  659 bits (341), Expect = 0.0
 Identities = 344/345 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actacatcgttctgttggatcattaatttgtgattctcctgcctcggccttcaagagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actacatcgttctgttggatcattaatttgtgattctcctgcctcggccttcaagagttc 260

                                                                       
Query: 61  agagattaaaggaatgggctaccaggcctgggggctgttaaaagctaaaaaccagtaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagattaaaggaatgggctaccaggcctgggggctgttaaaagctaaaaaccagtaact 320

                                                                       
Query: 121 ggaaggaacaggaaggcttactgtggtaataaaggtctgaactagactttgttattctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaggaacaggaaggcttactgtggtaataaaggtctgaactagactttgttattctaa 380

                                                                       
Query: 181 agtgggtgcttccctcaccagcacctcataggtgagaaaaaggctacttttctttaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgggtgcttccctcaccagcacctcataggtgagaaaaaggctacttttctttaaaaa 440

                                                                       
Query: 241 cgtaaatctaattgagtgttacctttctattctattctttaaagttttggttatatcatc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 cgtaaatctaattgagtgttacctttctattctattctttaaagttttggttatattatc 500

                                                        
Query: 301 attactgtgagtatgtgtttgatatgtgtgcatgtgattgcgtgt 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attactgtgagtatgtgtttgatatgtgtgcatgtgattgcgtgt 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)