Query= MSMg01no098_o15.b1 MSMg01no098_o15.b1 CHROMAT_FILE:
MSMg01no098_o15.b1 PHD_FILE: MSMg01no098_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:10 2005
(596 letters)
>mm_chr8_117443904_117444904
Length = 1001
Score = 1098 bits (568), Expect = 0.0
Identities = 590/602 (98%), Gaps = 9/602 (1%)
Strand = Plus / Minus
Query: 4 ggaattcatcataaccaacttcacaagattcttgctacaggtatgcccgggtgagtcaag 63
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ggaattcatcataataaacttcacaagattcttgctacaggtatgcccgggtgagtcaag 590
Query: 64 aagggtttttgtttaggtctccaatttagggagactccttaagactagactgtgaagcca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aagggtttttgtttaggtctccaatttagggagactccttaagactagactgtgaagcca 530
Query: 124 gatgtggtggcccacacctttaattccagatagaggccatgggtctctctgaattccaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gatgtggtggcccacacctttaattccagatagaggccatgggtctctctgaattccaga 470
Query: 184 ctagcaaaggctatataggaagagactctctacaaaaaaaaaa-----aaaaagactggc 238
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 469 ctagcaaaggctatataggaagagactctctacaaaaaaaaaaaaaacaaaaagactggc 410
Query: 239 ctatgaagattccacaagtcaaagggacgaagatcatatattagcttgactaaattcagt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctatgaagattccacaagtcaaagggacgaagatcatatattagcttgactaaattcagt 350
Query: 299 caaggatggtctgtctgtctgcgagaagtacaacaggccatgttaggacttggcaaaggg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 caaggatggtctgtctgtctgcgagaagtacaacaggccatgttaggacttggcaaaggg 290
Query: 359 agagttctttgtctctgtctc----tctgtctgtcttccacagggtctcatgtagcacag 414
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 289 agagttctttgtctctgtctctctgtctgtctgtcttccacagggtctcatgtagcacag 230
Query: 415 atgagcttcaaactggctaaatagccaagaatgaccttgaacttctgatcctctccagcc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 atgagcttcaaactggctaaatagccaagaatgaccttgaacttctgatcctctccagcc 170
Query: 475 tttgaccccggagggttgggattataggtgggcactgccattaaacccagtgctttttcc 534
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 169 tttgaccccggagggttgggattacaggtgggcactgccattaaacccagtgctttttcc 110
Query: 535 tttccatgccgggcaaatggttgaccttgatcaactgagccacattcccagcctgccggc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 tttccatgccgggcaaatggttgaccttgatcaactgagccacattcccagcctgccggc 50
Query: 595 aa 596
||
Sbjct: 49 aa 48
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 1001
Length adjustment: 10
Effective length of query: 586
Effective length of database: 991
Effective search space: 580726
Effective search space used: 580726
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_o15.g1 MSMg01no098_o15.g1 CHROMAT_FILE:
MSMg01no098_o15.g1 PHD_FILE: MSMg01no098_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:10 2005
(428 letters)
>mm_chr8_117384239_117385066
Length = 828
Score = 696 bits (360), Expect = 0.0
Identities = 398/428 (92%), Gaps = 28/428 (6%)
Strand = Plus / Plus
Query: 1 caagttccacaggaccacatagtgagactcccatctcacatagatagatagatagataga 60
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 caagttccacaggaccacatagtgagactcccatctcacat------------------- 269
Query: 61 tagatagatagatagatagatagatagatagatagatagatagatagatagatagataga 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 --------t-gatagatagatagatagatagatagatagatagatagatagatagataga 320
Query: 121 tagatagataaaaagtgatttgcaaagctggctaatatagtgtgtgaatctatatatttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagatagataaaaagtgatttgcaaagctggctaatatagtgtgtgaatctatatatttc 380
Query: 181 agctttggcatgcttcatattcaggacaaattgtcttgggtctcagtgtgctttcaacag 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctttggcatgcttcatattcaggacaaattgtcttgggtctcagtgtgctttcaacag 440
Query: 241 cctacatttccttctcatttgggatgtatgtcgtgtgaaagctggtcttgtctggctcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 cctacatttccttctcatttgggatgtatgtcgtgtgaaagctggtcttgtctggcttct 500
Query: 301 tcttcctgaatgatctttattctagtatgtgagagggacagtacccacctttgatgatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttcctgaatgatctttattctagtatgtgagagggacagtacccacctttgatgatta 560
Query: 361 atcttgattgtcaacaagatggagttggcaagtgcctagcagatacaaccatgaaggagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcttgattgtcaacaagatggagttggcaagtgcctagcagatacaaccatgaaggagc 620
Query: 421 ttcctgag 428
||||||||
Sbjct: 621 ttcctgag 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
