Query= MSMg01no099_e03.b1 MSMg01no099_e03.b1 CHROMAT_FILE:
MSMg01no099_e03.b1 PHD_FILE: MSMg01no099_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:39 2005
(465 letters)
>mm_chr8_66824115_66824979
Length = 865
Score = 839 bits (434), Expect = 0.0
Identities = 460/474 (97%), Gaps = 10/474 (2%)
Strand = Plus / Plus
Query: 1 tgtagcttcacgtttgaacagcacagtcactattacattccatcacagtgtactgttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tgtagcttcacgtttgaacagcacagtcactattacattccatcacagtgtactgttttt 252
Query: 61 ttaacagatttgctattaagtatgcagacttgggttccatctgagttgtaactattttat 120
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 253 taaacagatttgctattaagtgtgcagacttgggttccatctgagttgtaactattttat 312
Query: 121 aaagactaggaaatcaatactgacccatttgaatacaatctcaaaacatagtatattata 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 313 aaagactaggaaatcaatactgacccatttgaataaaatctcaaaacatagtatattata 372
Query: 181 tctcatagggctgcatactgcactttgagagcagccaggaagttttgtaaaaagtacaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tctcatagggctgcatactgcactttgagagcagccaggaagttttgtaaaaagtacaca 432
Query: 241 ttcacattttaatatatgtataaatacatcatatatatatata---------agtatata 291
||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 433 ttcacattttaatatatgtataaatacatcatatatatatatatatatatata-tatata 491
Query: 292 tatatatatattgtacatatttgatggatttggtttcattggcatcaacgtgtgttccag 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tatatatatattgtacatatttgatggatttggtttcattggcatcaacgtgtgttccag 551
Query: 352 ctgtttgtgcataattttgtgtgactttgcattttccttggagattaggataagctaaaa 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctgtttgtgcataattttgtgtgactttgcattttccttggagattaggataagctaaaa 611
Query: 412 aagagatcacccttccaaaagaggcagttcacttttcaatatgttgcataacag 465
||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 612 aagagatcacccttccaaaagaggcagctcacttttcaatatgttgcataacag 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no099_e03.g1 MSMg01no099_e03.g1 CHROMAT_FILE:
MSMg01no099_e03.g1 PHD_FILE: MSMg01no099_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:39 2005
(551 letters)
>mm_chr8_66898518_66899468
Length = 951
Score = 1004 bits (519), Expect = 0.0
Identities = 543/551 (98%)
Strand = Plus / Minus
Query: 1 actttgtagaccaggctggccttgaacccagaaatccgcctgcctctgcctcccaagtgc 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 855 actttgtagaccaggctggccttgaacccagaaatctgcctgcctctgcctcccaagtgc 796
Query: 61 tgggattaaaggcatgcgccaccatgccaggctctccatttttctttcttcagtgtatgg 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tgggattataggcatgcgccaccatgccaggctctccatttttctttcttcagtgtatgg 736
Query: 121 tccagtttagtctggttgtccattactaagctttctacaggggtcttgggatcagtcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tccagtttagtctggttgtccattactaagctttctacaggggtcttgggatcagtcagg 676
Query: 181 cttggtagaaaatgtgaataatagaaagggcttatctagtttgctggcctttgttccaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cttggtagaaaatgtgaataatagaaagggcttatctagtttgctggcctttgttccaag 616
Query: 241 gatttgagaggacttgattcgtaaaccaccagggactccttagtcacctttcctttgttt 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 615 gatttgagaggacttgattcgtaaaccaccagggactccttagtcgcctttcctttgttt 556
Query: 301 ttatttactaagagtgttgtcagctaaatagtttcattagatggaaagtcagttggcagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttatttactaagagtgttgtcagctaaatagtttcattagatggaaagtcagttggcagt 496
Query: 361 ccagatgcaaagtactcaggaatatcggtgccttgaacggcaggccaatgtcatatggct 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 495 ccagatgcaaagtactcaggaatattggtgccttgaacggcaggccaatgtcatatggct 436
Query: 421 gaactgttagtgtcattttgaatgcgtttcaatgatgaattttccacaagcctagaattg 480
||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 435 gaactcttagtgtcattttgaatgcatttcaatgatgaattttccacaggcctagaattg 376
Query: 481 ccttctagataaaatttatacttaaaaataaaagtcacctttcatagacttaaaatctgg 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccttgtagataaaatttatacttaaaaataaaagtcacctttcatagacttaaaatctgg 316
Query: 541 cattagcagga 551
|||||||||||
Sbjct: 315 cattagcagga 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|