BAC Information

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BAC

Clone NameMSMg01-099E03
Chromosome8 (Build37)
Map Location 66,824,307 - 66,899,372
singlet/doubletdoublet
Overlap genenone
Upstream geneSpock3, LOC384831, EG244495, Tll1, LOC100040989
Downstream geneCpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099E03.T7 (MSMg01no099_e03.b1)MSMg01-099E03.TJ (MSMg01no099_e03.g1)
ACCAG315236AG315237
length728704
length of high quality
(start - end)
465 (68 - 532)551 (76 - 626)
definitionCHROMAT_FILE: MSMg01no099_e03.b1 PHD_FILE: MSMg01no099_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:39 2005CHROMAT_FILE: MSMg01no099_e03.g1 PHD_FILE: MSMg01no099_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,824,307 - 66,824,779)(66,898,822 - 66,899,372)
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAGGGGTACCGGTGTAGCTTCACGTTTGAACAGCACAGTCACTAT
TACATTCCATCACAGTGTACTGTTTTTTTAACAGATTTGCTATTAAGTAT
GCAGACTTGGGTTCCATCTGAGTTGTAACTATTTTATAAAGACTAGGAAA
TCAATACTGACCCATTTGAATACAATCTCAAAACATAGTATATTATATCT
CATAGGGCTGCATACTGCACTTTGAGAGCAGCCAGGAAGTTTTGTAAAAA
GTACACATTCACATTTTAATATATGTATAAATACATCATATATATATATA
AGTATATATATATATATATTGTACATATTTGATGGATTTGGTTTCATTGG
CATCAACGTGTGTTCCAGCTGTTTGTGCATAATTTTGTGTGACTTTGCAT
TTTCCTTGGAGATTAGGATAAGCTAAAAAAGAGATCACCCTTCCAAAAGA
GGCAGTTCACTTTTCAATATGTTGCATAACAGATGTTTCCAAGAAAGTGT
GTGTGTGTGTGTGCGTGTGTGCCGTGTTTGCGTGCCGCCCCTTCTTTTCT
TCCCTTCTTTTCCTCCTCCCCTTCCGTCCCCTCTCCTCTCCCTTCTCCCC
TTCCCCCCCCTCTTTTCTTCCCCCCCTTCTTTCTTTTCTCCCTCCTCTCT
CTTCCCTCCCTCTTCCCTTTTTTTTTTT
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTTGA
ACCCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCAT
GCGCCACCATGCCAGGCTCTCCATTTTTCTTTCTTCAGTGTATGGTCCAG
TTTAGTCTGGTTGTCCATTACTAAGCTTTCTACAGGGGTCTTGGGATCAG
TCAGGCTTGGTAGAAAATGTGAATAATAGAAAGGGCTTATCTAGTTTGCT
GGCCTTTGTTCCAAGGATTTGAGAGGACTTGATTCGTAAACCACCAGGGA
CTCCTTAGTCACCTTTCCTTTGTTTTTATTTACTAAGAGTGTTGTCAGCT
AAATAGTTTCATTAGATGGAAAGTCAGTTGGCAGTCCAGATGCAAAGTAC
TCAGGAATATCGGTGCCTTGAACGGCAGGCCAATGTCATATGGCTGAACT
GTTAGTGTCATTTTGAATGCGTTTCAATGATGAATTTTCCACAAGCCTAG
AATTGCCTTCTAGATAAAATTTATACTTAAAAATAAAAGTCACCTTTCAT
AGACTTAAAATCTGGCATTAGCAGGATAAACTTTCTATGTGAGGTATATT
TTGGCGGCCCCTGTTAGTGTGGCTGTATAAACATATGGCTCAACCTTATT
TTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_e03.b1 MSMg01no099_e03.b1 CHROMAT_FILE:
MSMg01no099_e03.b1 PHD_FILE: MSMg01no099_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:39 2005
         (465 letters)



>mm_chr8_66824115_66824979
          Length = 865

 Score =  839 bits (434), Expect = 0.0
 Identities = 460/474 (97%), Gaps = 10/474 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtagcttcacgtttgaacagcacagtcactattacattccatcacagtgtactgttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tgtagcttcacgtttgaacagcacagtcactattacattccatcacagtgtactgttttt 252

                                                                       
Query: 61  ttaacagatttgctattaagtatgcagacttgggttccatctgagttgtaactattttat 120
           | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 253 taaacagatttgctattaagtgtgcagacttgggttccatctgagttgtaactattttat 312

                                                                       
Query: 121 aaagactaggaaatcaatactgacccatttgaatacaatctcaaaacatagtatattata 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 313 aaagactaggaaatcaatactgacccatttgaataaaatctcaaaacatagtatattata 372

                                                                       
Query: 181 tctcatagggctgcatactgcactttgagagcagccaggaagttttgtaaaaagtacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tctcatagggctgcatactgcactttgagagcagccaggaagttttgtaaaaagtacaca 432

                                                                       
Query: 241 ttcacattttaatatatgtataaatacatcatatatatatata---------agtatata 291
           |||||||||||||||||||||||||||||||||||||||||||         | ||||||
Sbjct: 433 ttcacattttaatatatgtataaatacatcatatatatatatatatatatata-tatata 491

                                                                       
Query: 292 tatatatatattgtacatatttgatggatttggtttcattggcatcaacgtgtgttccag 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tatatatatattgtacatatttgatggatttggtttcattggcatcaacgtgtgttccag 551

                                                                       
Query: 352 ctgtttgtgcataattttgtgtgactttgcattttccttggagattaggataagctaaaa 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctgtttgtgcataattttgtgtgactttgcattttccttggagattaggataagctaaaa 611

                                                                 
Query: 412 aagagatcacccttccaaaagaggcagttcacttttcaatatgttgcataacag 465
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 612 aagagatcacccttccaaaagaggcagctcacttttcaatatgttgcataacag 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no099_e03.g1 MSMg01no099_e03.g1 CHROMAT_FILE:
MSMg01no099_e03.g1 PHD_FILE: MSMg01no099_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:39 2005
         (551 letters)



>mm_chr8_66898518_66899468
          Length = 951

 Score = 1004 bits (519), Expect = 0.0
 Identities = 543/551 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgtagaccaggctggccttgaacccagaaatccgcctgcctctgcctcccaagtgc 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 855 actttgtagaccaggctggccttgaacccagaaatctgcctgcctctgcctcccaagtgc 796

                                                                       
Query: 61  tgggattaaaggcatgcgccaccatgccaggctctccatttttctttcttcagtgtatgg 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tgggattataggcatgcgccaccatgccaggctctccatttttctttcttcagtgtatgg 736

                                                                       
Query: 121 tccagtttagtctggttgtccattactaagctttctacaggggtcttgggatcagtcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tccagtttagtctggttgtccattactaagctttctacaggggtcttgggatcagtcagg 676

                                                                       
Query: 181 cttggtagaaaatgtgaataatagaaagggcttatctagtttgctggcctttgttccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cttggtagaaaatgtgaataatagaaagggcttatctagtttgctggcctttgttccaag 616

                                                                       
Query: 241 gatttgagaggacttgattcgtaaaccaccagggactccttagtcacctttcctttgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 615 gatttgagaggacttgattcgtaaaccaccagggactccttagtcgcctttcctttgttt 556

                                                                       
Query: 301 ttatttactaagagtgttgtcagctaaatagtttcattagatggaaagtcagttggcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttatttactaagagtgttgtcagctaaatagtttcattagatggaaagtcagttggcagt 496

                                                                       
Query: 361 ccagatgcaaagtactcaggaatatcggtgccttgaacggcaggccaatgtcatatggct 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 495 ccagatgcaaagtactcaggaatattggtgccttgaacggcaggccaatgtcatatggct 436

                                                                       
Query: 421 gaactgttagtgtcattttgaatgcgtttcaatgatgaattttccacaagcctagaattg 480
           ||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 435 gaactcttagtgtcattttgaatgcatttcaatgatgaattttccacaggcctagaattg 376

                                                                       
Query: 481 ccttctagataaaatttatacttaaaaataaaagtcacctttcatagacttaaaatctgg 540
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccttgtagataaaatttatacttaaaaataaaagtcacctttcatagacttaaaatctgg 316

                      
Query: 541 cattagcagga 551
           |||||||||||
Sbjct: 315 cattagcagga 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)