BAC Information

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BAC

Clone NameMSMg01-099F02
Chromosome8 (Build37)
Map Location 128,364,099 - 128,364,199
singlet/doubletsinglet
Overlap geneE330039K12Rik
Upstream gene2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1, Sipa1l2, 4933403G14Rik, 2310079N02Rik
Downstream geneBC021891, Kcnk1, Slc35f3, LOC668434, 1810063B05Rik, EG619653, Irf2bp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099F02.T7 (MSMg01no099_f02.b1)MSMg01-099F02.TJ (MSMg01no099_f02.g1)
ACCAG315282AG315283
length821842
length of high quality
(start - end)
---101 (166 - 266)
definitionCHROMAT_FILE: MSMg01no099_f02.b1 PHD_FILE: MSMg01no099_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:44 2005CHROMAT_FILE: MSMg01no099_f02.g1 PHD_FILE: MSMg01no099_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTTTATCCTCCTTTCCCCCTTCCTTTTCTTTCTTTTCTTTTCTTTTT
GCTCCTTTCCCCCTCCCTTTCAACXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTCCAAGAGGATCCGCGGAATTCCTCCTATGCCCGTTTTGACGAACCAA
TGAGATTACTGCTTTGACTCACAGATAGCCACATTGCTTGCCAGACCCCT
GGGCACTATGGATAGTCATATCATCAAAGAGCTTTACCTATAGCTTGGAT
GCTGTCTGACTCTTTCTATCAGTGACATGTTCATCTGGTCTCCTTTCAGG
CAGCTACACCATGACGAGTCCCCTCATTTCAGTCTCTTGTCTGCATCTTG
CTCAATATCGGGTAGGGGTATATTCTTCGACGCTCTATGCATCTTTTTGG
GCTCCAGCCAGCAAAACGCTCCAATCCTCTGAAACCTTGAATCCCTGCCC
ACCTGCTACATTGATCACAGACAGCGCCCCCTACATCTCCCTTACGCGAA
TTGATTTCCGAGAGACTGCTTCGTGTTTAATATTTATGTAAGTGAACCTG
TGTTCTGACCTCCATACACCCCCGCTTTTATCTACCTTATTCCCTCTACC
CTTCCCTCGTATCCACACCCTCTTTTTATTTTCTCCATTCTCCCCTCGTT
TGTCTTCCCTACAACTGACAAAATTGACCCGTCGTGTCCTATCCCCCTAT
TATTAACTTTCTCCTCTCCTTTTTCGGCCGCTTAACTCCCCCTTCTTACC
CATCTCTCTGATCTTCATTTAATCTCCCCCCCCTTCGTATTCACAGTCCC
TTTGCCGCTATGTTGTTTTAT
CCCTCCCTCGTCTTCTTTCCCCTTTTCTCCGCTTTTTNCCCCCCCCTTTT
TTTTCCCCCCCCCCTAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATAGTTGG
GAGGATAGTATAGGAAGTCGTGGCTGATCTCAGGCCAGGGTCTAATGATC
CTCCTCACTCTCTCCTATAAAGGGGCTCTGCCAGGTTCCCCCTTGTTGAG
GGTCTCCTGAATCTTTTCAGGCAACCATAACTTCTCTGAGTAGAGTGTCT
GTGGCTTGTACGATAGTAACAGTGTCATTTGCTAGAGTGCCTACCTCGTG
TGCCCAAAGCCTCTTGGTTCCAACCTCCTACTCCACATTACTGAGTGTGG
CGCTGTTTGCCTGGAATCTCAACAGTCACGAGACCGATGCGTGAGTATCT
GAAGCCCTTCTTCTCATGACTTCCCGCGTTTTTCCTGTACCTTAAGACAT
CTTCGTTTCAAACCCTCCCCCCCCAAATCACTCTTGCCTCTCTATCCACT
TTCGCCTCGATGTCCATCCTGTTCTGCTCGCCAACTCCACTATGTGTCTG
CATTACTCAGGCCGCGCATCCCTCTATCTCCTTCTTCTCCCCCCCCTGTT
GTTTCTACCTGCTTGTCTCTTTGCTCTTTTCGCCCCCCCCCTTTTCCGCG
TTTGTATTTTCGTAGTCGCTTTTTAAAATGCCCCACCTCATTCTCTATTT
ATTGTTTCCACGTCTTCTTTTCTCCTTTCCCTTTTGTTTATGCTTATTCA
CCCACATCACTCCCCCTTTCCGTCTCTCTTTCTTTGTGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_f02.g1 MSMg01no099_f02.g1 CHROMAT_FILE:
MSMg01no099_f02.g1 PHD_FILE: MSMg01no099_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:44 2005
         (101 letters)



>mm_chr8_128363899_128364399
          Length = 501

 Score =  195 bits (101), Expect = 5e-55
 Identities = 101/101 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcgtggctgatctcaggccagggtctaatgatcctcctcactctctcctataaagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agtcgtggctgatctcaggccagggtctaatgatcctcctcactctctcctataaagggg 242

                                                    
Query: 61  ctctgccaggttcccccttgttgagggtctcctgaatcttt 101
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctctgccaggttcccccttgttgagggtctcctgaatcttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 501
Length adjustment: 8
Effective length of query: 93
Effective length of database: 493
Effective search space:    45849
Effective search space used:    45849
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)