BAC Information

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BAC

Clone NameMSMg01-099I17
Chromosome8 (Build37)
Map Location 67,582,649 - 67,582,946
singlet/doubletsinglet
Overlap genenone
Upstream geneTll1, LOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60
Downstream geneLOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, March1, LOC100040986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099I17.T7 (MSMg01no099_i17.b1)MSMg01-099I17.TJ (MSMg01no099_i17.g1)
ACCAG315456AG315457
length727725
length of high quality
(start - end)
501 (68 - 568)296 (76 - 371)
definitionCHROMAT_FILE: MSMg01no099_i17.b1 PHD_FILE: MSMg01no099_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:05 2005CHROMAT_FILE: MSMg01no099_i17.g1 PHD_FILE: MSMg01no099_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGAAGAATGCAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGG
AACAAAACACCCATGGAAGGAGTTACAGAGACACAGTTTGGAGCTGAGAC
GAAAGGATGGACCATCTAGAGACTGCCATACCCAGGGAACCATCCCATAA
TCAGCCTCCAAACGCTGACACCATTACATACACTAGCAAGATTTTGCTGA
AAGGACCCAGATATAGCTGTCTCTTGTGAGGCTATGCCGGGGCCTAGCAA
ACACAGAAGTGGATGCTCTCAGTCAGCTATTGGATGGATCACAGGGCCCC
CAATGGAGGAGCTAGAGAAAGTACCCAAGGCGCTAAAGGGATCTGCAACC
CTATAGGTGGAACATCAATATGAACTACCCAGTACCCACCAGAGCTCATG
TCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTCAGCCATCATTGGAA
AGAAAGGGCCATTGGACAGGCAAACTTTATATGCCTAAGTACAGGGGAAC
GCCAGGGCCAAAAAGTGTTAGTGGATGCGTAGCGGAGCGCCCCCTCTTTT
TTTCCCCCCTTCATCGTCTTTTTTTTTTTTCTCCCCTATCCCTCCTTCCA
TTTCCCCCACCTTTTTTCCTTTCCCCTTTTCTGTTTCTCACCTCCTCTCT
TTTTCTTCCTTGCCCCTCTTTATTTCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATGCTGCCATTAACTCAGAGGCAC
TCGTGCTCATCTGCACTTTGTAGTTCGTCATCTGTGTGGTTTTTAGGATT
ATATCTTCCGTCAGGGAGCAGGCTGAGCTGTCCACCTTCAAAGCCCCTCA
GAAATACTGATTTATTTTAAAAAAAATAGGCCGCCTGTTAACTCAGACTG
TAGGCACCAGCCAGAACCCCTTTGTGTGTGTGTGTGTGTGTAAAATCAAA
GTACTGAGAATAACTTTTGCTTTCTTTTCTTTTATTTTGTGTGTCCGTGT
GCCACAGTCCATGTTCTCAGAATTCACAGGGCAAATTCTGGGAATTGGTT
CTAGAGAGTGAACTCTGACCTTCAGGCTTAGAGAGAAGGGTCTTTACCCA
CTGAGCCATCCCCAGCCTTGATTGCTCTTTTCATATGGTGGAAAGTAATT
CAAGGACCGAGATGTGGTTCCAGGGTCTTATATGTGCTCTTAGCATGCAT
GAAATTCCAGGTTCAGTTCCCAGTACTTGAAGGCAAGAAATTAGAATAAG
AATAGCATCTTGTTACATGTGAAAGCTCTATGACAGTTCCACTTGTGTTG
GAGAGATGGCTCACCAGTTAACAGCATTGACTGCTCTTCCAACGTTCCTG
AGTTCAACCCCCGACTTCCATATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_i17.g1 MSMg01no099_i17.g1 CHROMAT_FILE:
MSMg01no099_i17.g1 PHD_FILE: MSMg01no099_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:05 2005
         (296 letters)



>mm_chr8_67582449_67583146
          Length = 698

 Score =  482 bits (249), Expect = e-140
 Identities = 286/299 (95%), Gaps = 4/299 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgctgccattaactcagaggcactcgtgctcatctgcactttgtagttcgtcatctgt 60
           ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgctgccgttaactcagagacactcgtgctcatctgcactttgtagttcgtcatctgt 260

                                                                       
Query: 61  gtggtttttaggattatatcttccgtcagggagcaggctgagctgtccaccttcaaagcc 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggtttttaggattatatcttcagtcagggagcaggctgagctgtccaccttcaaagcc 320

                                                                       
Query: 121 cctcagaaatactgatttattttaaaaaaaataggccgcctgttaactcagactgtaggc 180
           ||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||||||
Sbjct: 321 cctcagaaatactgatttatttttaaaaaa-taggcagcctgttacctcagactgtaggc 379

                                                                       
Query: 181 accagccagaacccctttgtgtgtgtgtgtgtgtgta--aaatcaaagtactgagaataa 238
           ||||||| |||||||||||||||||||||||||||||  |||||||||| ||||||||||
Sbjct: 380 accagcctgaacccctttgtgtgtgtgtgtgtgtgtataaaatcaaagtgctgagaataa 439

                                                                      
Query: 239 cttttgctttcttttctttt-attttgtgtgtccgtgtgccacagtccatgttctcaga 296
           ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttttgctttcatttctttttattttgtgtgtccgtgtgccacagtccatgttctcaga 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 698
Length adjustment: 9
Effective length of query: 287
Effective length of database: 689
Effective search space:   197743
Effective search space used:   197743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)