BAC Information

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BAC

Clone NameMSMg01-099N10
Chromosome8 (Build37)
Map Location 37,083,689 - 37,219,671
singlet/doubletdoublet
Overlap geneLOC671641, D8Ertd82e
Upstream geneLOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23
Downstream geneLonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099N10.T7 (MSMg01no099_n10.b1)MSMg01-099N10.TJ (MSMg01no099_n10.g1)
ACCAG315682AG315683
length707684
length of high quality
(start - end)
393 (71 - 463)425 (76 - 500)
definitionCHROMAT_FILE: MSMg01no099_n10.b1 PHD_FILE: MSMg01no099_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:29 2005CHROMAT_FILE: MSMg01no099_n10.g1 PHD_FILE: MSMg01no099_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,219,279 - 37,219,671)(37,083,689 - 37,084,112)
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGAGATACCCGAGGTGTTAGCTGTCATTGAACTGAATGCTGA
AGGAAGGAAGGCTGAGACGGAATCACATATGTGGTAGGTACATCGGCGCT
TAGATGAGCAGAGAGTGGAAGTCAGGCACCCACCCAGACTCTAGGTTTAA
ATGCTCCCTCCCTTCTTTATCCATCTAACATGGATAACGTTTGTAAACGT
TAATTTTTTTTATTAAACTCCAAGCTTACCTGTACAGATTTCTCCACGAA
GCAGAGAAAGGCTGTAAGGAGGTGTAATAATATCTCCAATACCAAGACTT
GCTTAAGTCTTCTGGAGCAGAGAAGGCAGGTAAACAAGGAAATTATTATT
ATGTCATTCATAATTCTCCAGTATTCACATCAGACACCAGAGTAAAACCT
CTTTTCCTACAACCATAGTAGGTCACCTGCATTAATGAATTCCTGTTTTG
GTCCATAGACCGCAGGGGTACTCCAGTGAAAGCTAGACAGACGACGTGAA
TGTTAGATCATTTTCTGATCACGAAAGGGAGTGGTATCCACTTATAGACA
CCCGGACACCACCCATTGTTACATTCTTTTCCTAGTGTTTCCCCCATGCT
CTTTATCAGCACCTCCCATCGTGAATATTAAGTGGCCTCCTCTGGCCTCT
CTTTTTT
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACAGCTGCATGCCGTCTCCATCCA
TCCATCAATGGAGGATAAACTCCATGGAAGAGTGCCTTTCCTGCAGAGAG
GAAAGGGGAGATAGGTGAGCTACGAACCACAAAGCCCTTAGGATTTCCTT
CAGAACCATAGCCCAGATGAAAAGGTCATCCAAAAATACAAACAGATTCG
GTGAAACGAATGAGTGAGTGAATGAATGAATGAATGAATGAATGAGCAAA
TAACTCACCTCACCTGGAAAGTCTGCTCTCTCCAGCTAAAAGGCAGAAGA
TGGGAAGCCTAGCAAGACAGAAAACCTGCCAACAACCACTGTTCTCCTCC
TGACAAACACTGCAGGAAGACTGTAGCCCCATCCCACCCATGAGAAGGAC
TTGTATCTCCCTCGATTTCATGTTGAAACCCTGCTCTCCAATGAGATGGC
GTCTTAGTCAGGGTTTCTATTCCTGCACAAAACATCATGACCAAGAAGCA
AGTTGAGGAGAACAGAGCTTATTTCGCTTGCACTTCCACATTGCTGTTCA
TTACCACAGGAAGTCAGGACTGGACCTCCAAGTTGGTCATGAAGCAGGCA
CTGATGCCGAGGCCATGAAGGGATGTCCTTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_n10.b1 MSMg01no099_n10.b1 CHROMAT_FILE:
MSMg01no099_n10.b1 PHD_FILE: MSMg01no099_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:29 2005
         (393 letters)



>mm_chr8_37219079_37219871
          Length = 793

 Score =  752 bits (389), Expect = 0.0
 Identities = 392/393 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtgttagctgtcattgaactgaatgctgaaggaaggaaggctgagacggaatcacatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ggtgttagctgtcattgaactgaatgctgaaggaaggaaggctgagacggaatcacatat 534

                                                                       
Query: 61  gtggtaggtacatcggcgcttagatgagcagagagtggaagtcaggcacccacccagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gtggtaggtacatcggcgcttagatgagcagagagtggaagtcaggcacccacccagact 474

                                                                       
Query: 121 ctaggtttaaatgctccctcccttctttatccatctaacatggataacgtttgtaaacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ctaggtttaaatgctccctcccttctttatccatctaacatggataacgtttgtaaacgt 414

                                                                       
Query: 181 taattttttttattaaactccaagcttacctgtacagatttctccacgaagcagagaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 taattttttttattaaactccaagcttacctgtacagatttctccacgaagcagagaaag 354

                                                                       
Query: 241 gctgtaaggaggtgtaataatatctccaataccaagacttgcttaagtcttctggagcag 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gctgtaaggaggtggaataatatctccaataccaagacttgcttaagtcttctggagcag 294

                                                                       
Query: 301 agaaggcaggtaaacaaggaaattattattatgtcattcataattctccagtattcacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 agaaggcaggtaaacaaggaaattattattatgtcattcataattctccagtattcacat 234

                                            
Query: 361 cagacaccagagtaaaacctcttttcctacaac 393
           |||||||||||||||||||||||||||||||||
Sbjct: 233 cagacaccagagtaaaacctcttttcctacaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no099_n10.g1 MSMg01no099_n10.g1 CHROMAT_FILE:
MSMg01no099_n10.g1 PHD_FILE: MSMg01no099_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:29 2005
         (425 letters)



>mm_chr8_37083489_37084313
          Length = 825

 Score =  812 bits (420), Expect = 0.0
 Identities = 423/424 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagctgcatgccgtctccatccatccatcaatggaggataaactccatggaagagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagctgcatgccgtctccatccatccatcaatggaggataaactccatggaagagtgc 260

                                                                       
Query: 61  ctttcctgcagagaggaaaggggagataggtgagctacgaaccacaaagcccttaggatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttcctgcagagaggaaaggggagataggtgagctacgaaccacaaagcccttaggatt 320

                                                                       
Query: 121 tccttcagaaccatagcccagatgaaaaggtcatccaaaaatacaaacagattcggtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttcagaaccatagcccagatgaaaaggtcatccaaaaatacaaacagattcggtgaa 380

                                                                       
Query: 181 acgaatgagtgagtgaatgaatgaatgaatgaatgaatgagcaaataactcacctcacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgaatgagtgagtgaatgaatgaatgaatgaatgaatgagcaaataactcacctcacct 440

                                                                       
Query: 241 ggaaagtctgctctctccagctaaaaggcagaagatgggaagcctagcaagacagaaaac 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaaggctgctctctccagctaaaaggcagaagatgggaagcctagcaagacagaaaac 500

                                                                       
Query: 301 ctgccaacaaccactgttctcctcctgacaaacactgcaggaagactgtagccccatccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgccaacaaccactgttctcctcctgacaaacactgcaggaagactgtagccccatccc 560

                                                                       
Query: 361 acccatgagaaggacttgtatctccctcgatttcatgttgaaaccctgctctccaatgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acccatgagaaggacttgtatctccctcgatttcatgttgaaaccctgctctccaatgag 620

               
Query: 421 atgg 424
           ||||
Sbjct: 621 atgg 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)