Query= MSMg01no100_d04.b1 MSMg01no100_d04.b1 CHROMAT_FILE:
MSMg01no100_d04.b1 PHD_FILE: MSMg01no100_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:59 2005
(444 letters)
>mm_chr8_130162576_130163419
Length = 844
Score = 766 bits (396), Expect = 0.0
Identities = 402/404 (99%)
Strand = Plus / Minus
Query: 41 ggtctgagaggtattgaggacagggctaggtattgaggaaatgataaatatgacttacaa 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ggtctgagaggtattgaggacagggctaggtattgaggaaatgataaatatgacttacaa 785
Query: 101 cattgtacaaaattctcaaagagctaattacaaaagcattttaaaaaaaatcaatggatc 160
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 784 cattgtacaaaattctcaaagagctaattacaaaagcatttaaaaaaaaatcaatggatc 725
Query: 161 acagtcaataacaccaccagctagagattaaaccttcaacatatgagcctttgagggaca 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 acagtcaataacaccaccagctagagattaaaccttcaacatatgagcctttgagggaca 665
Query: 221 ttccataccaaaccacagcacagtggacattggtagatggaccactgtagaatgaaaggc 280
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 664 ttccataccaaaccacagcacagtggacattggcagatggaccactgtagaatgaaaggc 605
Query: 281 taaccatgagtcataacagtggggaagtctgtggttagacttcaataggagaaaaggata 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 taaccatgagtcataacagtggggaagtctgtggttagacttcaataggagaaaaggata 545
Query: 341 gaaactgtgtgggtcattgaaagcctgacatcatcagagctaaagacgttgggcatcttc 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gaaactgtgtgggtcattgaaagcctgacatcatcagagctaaagacgttgggcatcttc 485
Query: 401 gcacagaccatgagaatctgtgtaactcttgagctaccgagcct 444
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gcacagaccatgagaatctgtgtaactcttgagctaccgagcct 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_d04.g1 MSMg01no100_d04.g1 CHROMAT_FILE:
MSMg01no100_d04.g1 PHD_FILE: MSMg01no100_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:59 2005
(453 letters)
>mm_chr8_130008983_130009834
Length = 852
Score = 830 bits (429), Expect = 0.0
Identities = 447/453 (98%), Gaps = 1/453 (0%)
Strand = Plus / Plus
Query: 1 cttttggagagaggggtggctttttagatttaagtacgcatacaaaccgtatgtgtatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttggagagaggggtggctttttagatttaagtacgcatacaaaccgtatgtgtatag 260
Query: 61 ggcttacacacaaattctcatttctccatttacttttgctggcattcgtgaggatctcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcttacacacaaattctcatttctccatttacttttgctggcattcgtgaggatctcac 320
Query: 121 cagagaaacctgctagtcttgtgcagctcaggggcaggtaacctcagtaggacatggatc 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 cagagaaacctgctagtcttgtgcagctcaggggcaggtaacctcactaggacatggatc 380
Query: 181 ctctctgagcttggtgcaaacccaaaggaaaagacaaccacgtgtgactcaaaacaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctctgagcttggtgcaaacccaaaggaaaagacaaccacgtgtgactcaaaacaaaac 440
Query: 241 tgtattacagcacaaatgatataaaagtactaggtttctgacagggtaagtttccctggg 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaa-acagcacaaatgatataaaagtactaggtttctgacagggtaagtttccctggg 499
Query: 301 ccattgtgactctaggctcaagtccctgactgctgaacttgagaggtcgcatacgtttaa 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 500 ccattgtgactctaggctcaagtccctgactgctgaagttgagaggtcgcataagtttaa 559
Query: 361 acattgactttgtagcagaaactgaagctgaccaaggacaaacagactggtttccaatga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acattgactttgtagcagaaactgaagctgaccaaggacaaacagactggtttccaatga 619
Query: 421 tcctcttgtctccttctctcctttatcctgtac 453
|||| ||||||||||||||||||||||||||||
Sbjct: 620 tccttttgtctccttctctcctttatcctgtac 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 852
Length adjustment: 10
Effective length of query: 443
Effective length of database: 842
Effective search space: 373006
Effective search space used: 373006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
