BAC Information

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BAC

Clone NameMSMg01-100I08
Chromosome8 (Build37)
Map Location 90,900,191 - 90,900,429
singlet/doubletsinglet
Overlap geneLOC100040369
Upstream geneCbln1, LOC100040294, 4933402J07Rik, Zfp423, LOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7
Downstream geneNkd1, 9130017C17Rik, Nod2, Cyld, LOC675985, Sall1, LOC100041089, EG625801, EG384862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100I08.T7 (MSMg01no100_i08.b1)MSMg01-100I08.TJ (MSMg01no100_i08.g1)
ACCAG316201AG316202
length706768
length of high quality
(start - end)
66 (69 - 134)239 (131 - 369)
definitionCHROMAT_FILE: MSMg01no100_i08.b1 PHD_FILE: MSMg01no100_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:24 2005CHROMAT_FILE: MSMg01no100_i08.g1 PHD_FILE: MSMg01no100_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAGTTCTCCCAGGGCCAAATAATACAGAATAAGACAAGTCCTTATTCTCA
TCGATGTGTATCCTCATTAGCTGGGTAATAGCACACCAGCTGATAGCTCT
GGGGACTTGGGGCCAGGCCTCACATGCTAAGAAAGAGCACTATCACTAAG
CTACATGTCTATTCAGTGTTTTGAGATAGGGTCTTGCTGCATAGTTTAGA
CAGGCCTAGAACTCATGATCTTTCTGTCTCAGCTTCCTGAGTGCTACAAT
TACCCACATGCTCTCCACTTTGGCTGATAGAGTAGTTTATTCTACAATGC
TTTTAAAACTGCAACCATGCACAACAACCAACTTTAGTAACTATAATCTC
TTGCTCACCCCCACAGCTTTAATTATGAGGCATCTATTTTCTTTTTCAGA
TCGATTTTATTTTACCGTGCGCGCTCTGCCTGTGCCCTGTGCAGCTCCCG
TAGCGGCCGACTACTGCAGCTGACCCTAACCGATGGTCGCGAAGTCCTTG
CGTTTCCTCGGCACCCACCCCGTGCCTCCGTCACAGTACCCAGAGTTCCT
AACCGGTGCATCACTTTCTAGTACCTCAAAAACCGGGCACATCATTTTCT
CTGCCCCCCATCTCGGGCCCCCTCTCCCCTGTCCGCTCGCTTGCCCACCC
CCCAAC
NNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNCCCTCCCTTCCCCCCCCC
CCNNNCCCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTAGACAAGGCTGTACC
TGAGAAACGAGTCTTTGCCAAGAAGCGCAAACCCAAACACATGTCCCTTA
TATCCACGGCCAATTACACTTACAGAGATGAACTCTTTCACTTCCTTTAC
ATCCCATACACGGCCGAACGACTTCCAAAAGAGAGAACCCCAAGGGAGAC
TGACTAGCGTGAGGCTCAGAAGCCCAGAACACGCTGTGCAGCTGTGGACA
ATGGGATTTCTGGAGGGGTAGGGTCGGCTGGCTATAGAAGAGAAAGAGCT
GGTGTGTATAGCAAGATCCCACGAGGCCGCTCCTAAAGCGCAGAACAGAG
GTGTGTGGTCCTTGGCGCTCATCAAAATCCTGTCACATGTCAACTCTGGG
CTCTGCTCGCCCCAGCCTGGGTCTTGCCCCACAAAGTGTTTTACTCCTGA
CAGCTTAAAAGAAAGATAAAGGTAAATCCCCTAACCCCAGACCACACAAA
GGGCCCCGAGACCTTTGTCAGGCTTCTCCATTTGGAAGCTCCTGAAACAA
GGGGCCTGGAACCCTAGTCAGACATTTCCCTGGAAAAAGGGCACCTAAAC
TTGGTTTAGCAATAAGAATACTTGGCACCCAAACGATTCCGGTACTCTAT
CCGGGTGGGTTTTTAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_i08.g1 MSMg01no100_i08.g1 CHROMAT_FILE:
MSMg01no100_i08.g1 PHD_FILE: MSMg01no100_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:24 2005
         (239 letters)



>mm_chr8_90899991_90900629
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtagacaaggctgtacctgagaaacgagtctttgccaagaagcgcaaacccaaacac 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 439 tctgtagacaaggctgtacctgagaaatgagtctttgccaagaagcgcaaacccaaacac 380

                                                                       
Query: 61  atgtcccttatatccacggccaattacacttacagagatgaactctttcacttcctttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atgtcccttatatccacggccaattacacttacagagatgaactctttcacttcctttac 320

                                                                       
Query: 121 atcccatacacggccgaacgacttccaaaagagagaaccccaagggagactgactagcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atcccatacacggccgaacgacttccaaaagagagaaccccaagggagactgactagcgt 260

                                                                      
Query: 181 gaggctcagaagcccagaacacgctgtgcagctgtggacaatgggatttctggaggggt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gaggctcagaagcccagaacacgctgtgcagctgtggacaatgggatttctggaggggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)