BAC Information

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BAC

Clone NameMSMg01-101A22
Chromosome8 (Build37)
Map Location 62,963,166 - 62,963,603
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101A22.T7 (MSMg01no101_a22.b1)MSMg01-101A22.TJ (MSMg01no101_a22.g1)
ACCAG316569AG316570
length666773
length of high quality
(start - end)
560 (16 - 575)438 (129 - 566)
definitionCHROMAT_FILE: MSMg01no101_a22.b1 PHD_FILE: MSMg01no101_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:07 2005CHROMAT_FILE: MSMg01no101_a22.g1 PHD_FILE: MSMg01no101_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACCCTTTGCAACGCCGAATGGCCGAGAAGCACCTGAAAAAATGTTCAGT
ATCCTTATTCATCAGGGAAATGCAAATCAAAACAAACCTGAGATTCCACC
TCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCGAGGATGTGGAGAAAAAACACTCCTCCATTGTTGGTGGGATTGCAA
GCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGG
CCATAGTACTACTGGATTATCCAGCAATACCTCTCCTGGGCATATATCCA
GAAGATGTTCTAACTGGTAAGAAGGACACATGCTCCATTATGTTCGTAGC
AGCCTTATTTATAATAGCCAGAAGCTGTAAAGAACCGAGATGTCCCTCTA
CAGAGGAATGGATACAAAAAAATGTGGTACATTTACACAATAGAGTACTA
CTCAGCTACTTATAAGAATTAATTTATGAAATTCCTAGGCAAATGGATAG
ACCTGGAGAGTATCATCCTGAGTGAGGTAACCCAATCACTACAGAACTCA
CATTATATGTACTCACTGATAAGTGAATATTAGCCTATAATCTTAGAATA
CCCAAGATACATGATACTAGTTGTAAAACACATGAAACTCAAGATGAATG
AAGACCCAATTGTGGT
ACANAAAAAAAAAAAACAAAAAAACAACCCCCCCCCTNCCTCTTAATTCN
NTNTTCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTACATCCCTACCCCTCTAGG
TGTTGGTGGGTGCTTTGGGGACAGGAGTTATTGGATTTGGCAATGTAGCT
ACTGACAAGTGCCCCATACTTCAAGGGATAGCTCCACAGGCAAGTGCACA
TAAAGAAGAAAGAGAGTTGATTTGATGAGAATGAAAGGAGAATAGGTGGG
GTAAGGTAAATACAATCAGAATGTACTGTCTGTGTGTTTGTGTGTTATAT
ATGAAACTGTCATGAAATAAATTTAGTTTTTTTTTAAAGTAGAAGTATGA
AAGTCATGTCTATATTTGGAAAATATTTGTCATATATGCAAAGCTACCCA
CAAGTCATAGTATATTCATGCATATACATATAGAAGCATTACTTAAAGCT
TCTATCTAGCTTCCAGAATTAATTTCATGAAAACTGCCTCATTATTTCTT
CCATCATTATTTCAGAACAAGACACTAAATATTTACAAAATATTTATAAA
GAGACAAAGCTTAAATAAACCAAACACTTAAAAAATTTATAATTTATGGA
ACCTGAAGTAATATAATTTAAGCAAATATGGAATCAGATTATTTGAGCAG
TCACCTCTGACATTTTCGCTCCTCTAAGAGACGGTTCCAAAGTCAGAAAG
AAGCCAAGACTCAAAATTATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_a22.g1 MSMg01no101_a22.g1 CHROMAT_FILE:
MSMg01no101_a22.g1 PHD_FILE: MSMg01no101_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:08 2005
         (438 letters)



>mm_chr8_62962966_62963803
          Length = 838

 Score =  839 bits (434), Expect = 0.0
 Identities = 437/438 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actacatccctacccctctaggtgttggtgggtgctttggggacaggagttattggattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actacatccctacccctctaggtgttggtgggtgctttggggacaggagttattggattt 260

                                                                       
Query: 61  ggcaatgtagctactgacaagtgccccatacttcaagggatagctccacaggcaagtgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaatgtagctactgacaagtgccccatacttcaagggatagctccacaggcaagtgca 320

                                                                       
Query: 121 cataaagaagaaagagagttgatttgatgagaatgaaaggagaataggtggggtaaggta 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catagagaagaaagagagttgatttgatgagaatgaaaggagaataggtggggtaaggta 380

                                                                       
Query: 181 aatacaatcagaatgtactgtctgtgtgtttgtgtgttatatatgaaactgtcatgaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatacaatcagaatgtactgtctgtgtgtttgtgtgttatatatgaaactgtcatgaaat 440

                                                                       
Query: 241 aaatttagtttttttttaaagtagaagtatgaaagtcatgtctatatttggaaaatattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatttagtttttttttaaagtagaagtatgaaagtcatgtctatatttggaaaatattt 500

                                                                       
Query: 301 gtcatatatgcaaagctacccacaagtcatagtatattcatgcatatacatatagaagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcatatatgcaaagctacccacaagtcatagtatattcatgcatatacatatagaagca 560

                                                                       
Query: 361 ttacttaaagcttctatctagcttccagaattaatttcatgaaaactgcctcattatttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttacttaaagcttctatctagcttccagaattaatttcatgaaaactgcctcattatttc 620

                             
Query: 421 ttccatcattatttcaga 438
           ||||||||||||||||||
Sbjct: 621 ttccatcattatttcaga 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)