BAC Information

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BAC

Clone NameMSMg01-101J12
Chromosome8 (Build37)
Map Location 129,234,081 - 129,372,353
singlet/doubletdoublet
Overlap genenone
Upstream gene2310079N02Rik, E330039K12Rik, BC021891, Kcnk1, Slc35f3, LOC668434, 1810063B05Rik, EG619653, Irf2bp2
Downstream geneTomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1, Pard3, EG628847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101J12.T7 (MSMg01no101_j12.b1)MSMg01-101J12.TJ (MSMg01no101_j12.g1)
ACCAG316967AG316968
length726730
length of high quality
(start - end)
249 (73 - 321)179 (74 - 252)
definitionCHROMAT_FILE: MSMg01no101_j12.b1 PHD_FILE: MSMg01no101_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:51 2005CHROMAT_FILE: MSMg01no101_j12.g1 PHD_FILE: MSMg01no101_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,234,081 - 129,234,328)(129,372,175 - 129,372,353)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAACGAGAGGCGCGG
AATTCTAAGCCATATCCACAGGCCTTCTTTTACCCCAGCCATAACCAGCA
TGAGGGACAGGCTCCCCCGAGACCCCCTCCTCATACCTGCTATGGTATGA
TCCCACCTGGAGGGATTTCACAAGGCAAATGAGATAAAAGCTTTGATGCA
AGCTTGTCATGCTAAGGAGACCCAGCCAAGGTCTTGGCAGGGCCTGCAGC
TTGCTCCAAGGGTGCTCTGGAGGTCTGGCTAAGACTAAGAGAAGTAATCC
CAGGGCTTCCAGCTTGCAGGTCTTTTTTTGTGTGGTCCCTAAGACCTGGG
ATCAGGAGGAGAGCCCTAGGCCAGGGTCCCAGCCGCAGCTCAGGGGGCCC
AAGCAGAGACTCTCTCACTGTAGTGAGAAAACTTATATAAATAAACATCA
GTGGATATTTGTGCTCATTTTTGCATATTAATAAGCAAAAATGATAACTT
TCTAATAACTGGCCAGAGATTTTACAATAACCTCATACCTAGCACTACTC
TTGGCACCTAGTAGGAACTCAGAAAGTCTAGTGTGGGACTTCCCAATACC
TGTAGTGCTAGGCCCAGACCCGCCTCCTGATCCCGGGTCCCTGTGCATTC
TACAGAGGAAGTATGACTGTCCCTCCTGAGTCCTGTTACCCCTTGCCGTT
CACACAGTATACGCGTCTGCCCCCCT
NCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXTTCTCAAATGGGGGTGAC
CTATAGAAGTTTTCGCGAAACTCCTTGGAGAGTGCTCTTTGCAACCAAAC
GGAAGAACAAAAGGACAATTCTCAGAAGCACACCAAAAACGAAACCAAAT
AAAAACCCCATAAAAAATCCCTATGGGGTAAAGGAAATACCAGTCTGATG
CCTTTTGTGTCTTGTGTTGGGTCATAAAGGGCAGGCTCTCTAAGAGGTGG
TGTCAATAGTGGCAATGTGGCAATGTTTGGACTCCAGAGAGAATGCTCTG
GAATACAATAGAAGGCGACATCTATGTGTCTATGTGACTGGCAGCCATCA
GGTACAGCCTCTTGGCCCGCCCCTGTATGGAGCCTGGGAGAGGCACTGCG
CATTAAGGAGCTCAAAGATTGCACATGTTCACCGAGAGCTGGCAACTGGG
CCTGCCCCTTCTGGGAATGATCTGATGTCTGAAGATCTCTGACCTCCCCT
TAGACCCTAGATAACTATCTTGTACTTCCCTTTGAAGATGATATTTACTC
TCACAGTGCTCGACATCTCCCGCTGGTTTGATGCTCTCCGCATATACTGC
ATCTTGCAAAGTTGTCCCTAGGTGTTTCAGTTATCTACCGTATATATCAC
TTTCTTTTCTCCCATGGTCTTTCTGCCTTTAGCTCCCTCAGCCCGGCACG
TTTTGTTTCACAGGCCGCTCTTTGATCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_j12.b1 MSMg01no101_j12.b1 CHROMAT_FILE:
MSMg01no101_j12.b1 PHD_FILE: MSMg01no101_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:51 2005
         (249 letters)



>mm_chr8_129233881_129234529
          Length = 649

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttcttttaccccagccataaccagcatgagggacaggctcccccgagaccccctcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttcttttaccccagccataaccagcatgagggacaggctcccccgagaccccctcctc 260

                                                                       
Query: 61  atacctgctatggtatgatcccacctggagggatttcacaaggcaaatgagataaaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacctgctatggtatgatcccacctggagggatttcacaaggcaaatgagataaaagct 320

                                                                       
Query: 121 ttgatgcaagcttgtcatgctaaggagacccagccaaggtcttggcagggcctgcagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgatgcaagcttgtcatgctaaggagacccagccaaggtcttggcagggcctgcagctt 380

                                                                       
Query: 181 gctccaagggtgctctggaggtctggctaagactaagagaagtaatcccagggcttccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctccaagggtgctctggaggtctggctaagactaagagaagtaatcccagggcttccag 440

                   
Query: 241 cttgcagg 248
           ||||||||
Sbjct: 441 cttgcagg 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no101_j12.g1 MSMg01no101_j12.g1 CHROMAT_FILE:
MSMg01no101_j12.g1 PHD_FILE: MSMg01no101_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:52 2005
         (179 letters)



>mm_chr8_129371975_129372553
          Length = 579

 Score =  346 bits (179), Expect = e-100
 Identities = 179/179 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggagagtgctctttgcaaccaaacggaagaacaaaaggacaattctcagaagcacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttggagagtgctctttgcaaccaaacggaagaacaaaaggacaattctcagaagcacac 320

                                                                       
Query: 61  caaaaacgaaaccaaataaaaaccccataaaaaatccctatggggtaaaggaaataccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 caaaaacgaaaccaaataaaaaccccataaaaaatccctatggggtaaaggaaataccag 260

                                                                      
Query: 121 tctgatgccttttgtgtcttgtgttgggtcataaagggcaggctctctaagaggtggtg 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tctgatgccttttgtgtcttgtgttgggtcataaagggcaggctctctaagaggtggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)