BAC Information

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BAC

Clone NameMSMg01-103C03
Chromosome8 (Build37)
Map Location 123,855,275 - 123,855,674
singlet/doubletsinglet
Overlap genenone
Upstream geneGse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1
Downstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103C03.T7 (MSMg01no103_c03.b1)MSMg01-103C03.TJ (MSMg01no103_c03.g1)
ACCAG318082AG318083
length702708
length of high quality
(start - end)
109 (227 - 335)400 (79 - 478)
definitionCHROMAT_FILE: MSMg01no103_c03.b1 PHD_FILE: MSMg01no103_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:57 2005CHROMAT_FILE: MSMg01no103_c03.g1 PHD_FILE: MSMg01no103_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTCATAATTGCGGCGCTATACGACTCCTATGTCCAAGGACCGCGGAA
TCGCTTAGATCTGCAAGGCCTGGCTCCCTACATCCTGCCACTTGCTGCAT
TTTGTCAAAAGTCCATCTTGCTCTGAGGCTACAGGGTCAGGATCGAGTCA
GGTGGAGCCCCTCTCCCAGCCAACGTGTCAACCACCTACTTCCAACTTTG
CAAATGTGTCTTCCCNAATTCCCTCGGAGGTGAGGCTGGAGCAGAGAGAG
TCCTGTGCCCAAGGAACTTACACAAGTGCTTGGTAACACAGAGTCCTGTG
CCCAAGGAACTTACATGTATGCTTGGTAACACAGAAGTTTCTGTGCCTCT
ACCAGAAACTTAGTTAAACTAAACCGTGCCAAGGTCCTTTTGACTTANAA
ACTTGGCTAATTCACGTCCCCGGTTTTTAAAAGCCGCCACTGGGTTTTNN
AANNNNNNNNAAGTGTAGCNNNAGGAAGGGTTCCCNCNGGNNGNCCNNNN
NNNCTTGTTGCTGTGTGTTTACACCCCCTTCAAAAAAAATTTTTGTGGGG
AAAAAACACCCCCCCCGCGGCGGCGCGCGGGGGGTGGGTCCCCCCCCGCC
GGGAGAGGCCTTTTTTTATAAAAAAAAAAAATAAAAAAAAACATCTGGGA
AAAGAAAAATTTCCGGGGCGGGGCGGCCCCCTCCTCTTTTGTTTATTCCA
AA
NTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTAAGGCTAACAAATCTATC
CATGCTACCCTCCTGAGGGCCCAAAGTGCGGTCTGAGTCATGGCCCACAG
AGATACTCTCCACTGCTGGCAGACGAATGGAGCAACTGCTGGAAGAGCAA
GGGGCGATGGGGTGCTAGGTCCACTGAAGGGGTGAGGAGGGAACCCTCTA
CAAGGATAGAGCAACTTGCGGATACTCGGAGGGAGCAAGAATGGCTCTGG
CTGATAGGCCAAGGGTAGAACAGGCCCCCAATGCTGGTTCTCCTAGCTGG
AGAATCTAGGAGCTAAGACGCCCAGGGCTGGTCAGGACAGGACAGGTCCC
AAAAGGGATTTCATTTGATGTCAGCTGGGACAGTGGATCTGGGCTGCAGC
AAGACTTGTGGGAGGGGTGGAGGGGTGGCCTGTTTGAGGAGGCCTTTCCA
CACCCCCCCCCTTTTCCCACCCCCCCTCCTTTTCTTCCTTCCTCCCTTTC
TTCTTCCTTCCCTCCTTACCCTTTCCTTTCTTTCCCTCCTTTTCACTTTA
TCCCCTCCCCCCCCCCTTCCCCACTTTCTTTTCCTTCCTTTTCCTCCCCC
TTTTCCCCCACCCCCTTTCCCCCTTTACCCTCTCCACTTCCATACCCCCC
CCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_c03.g1 MSMg01no103_c03.g1 CHROMAT_FILE:
MSMg01no103_c03.g1 PHD_FILE: MSMg01no103_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:57 2005
         (400 letters)



>mm_chr8_123855075_123855874
          Length = 800

 Score =  766 bits (396), Expect = 0.0
 Identities = 399/400 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctaaggctaacaaatctatccatgctaccctcctgagggcccaaagtgcggtctgagt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 600 ctctaaggctaacaaatctatccatgccaccctcctgagggcccaaagtgcggtctgagt 541

                                                                       
Query: 61  catggcccacagagatactctccactgctggcagacgaatggagcaactgctggaagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 catggcccacagagatactctccactgctggcagacgaatggagcaactgctggaagagc 481

                                                                       
Query: 121 aaggggcgatggggtgctaggtccactgaaggggtgaggagggaaccctctacaaggata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aaggggcgatggggtgctaggtccactgaaggggtgaggagggaaccctctacaaggata 421

                                                                       
Query: 181 gagcaacttgcggatactcggagggagcaagaatggctctggctgataggccaagggtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gagcaacttgcggatactcggagggagcaagaatggctctggctgataggccaagggtag 361

                                                                       
Query: 241 aacaggcccccaatgctggttctcctagctggagaatctaggagctaagacgcccagggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aacaggcccccaatgctggttctcctagctggagaatctaggagctaagacgcccagggc 301

                                                                       
Query: 301 tggtcaggacaggacaggtcccaaaagggatttcatttgatgtcagctgggacagtggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tggtcaggacaggacaggtcccaaaagggatttcatttgatgtcagctgggacagtggat 241

                                                   
Query: 361 ctgggctgcagcaagacttgtgggaggggtggaggggtgg 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ctgggctgcagcaagacttgtgggaggggtggaggggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)