BAC Information

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BAC

Clone NameMSMg01-103J16
Chromosome8 (Build37)
Map Location 120,276,613 - 120,276,963
singlet/doubletsinglet
Overlap geneHsd17b2
Upstream geneLOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik
Downstream geneMphosph6, Cdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103J16.T7 (MSMg01no103_j16.b1)MSMg01-103J16.TJ (MSMg01no103_j16.g1)
ACCAG318429AG318430
length760709
length of high quality
(start - end)
---351 (82 - 432)
definitionCHROMAT_FILE: MSMg01no103_j16.b1 PHD_FILE: MSMg01no103_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:35 2005CHROMAT_FILE: MSMg01no103_j16.g1 PHD_FILE: MSMg01no103_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCAAGAGTCGTCGCCTCAGAAATTGCGAGCGCTATACGACTGACTATTTT
CAATAATAGGCGGAATCCATCCCACATTTCCACACCGAGTCTTGACCCGC
AGCCCCTCGGCCGTGACCATGGGCTTTAAACCACTCTACTACTTCCTGCA
GGTCAAATGGCTGCACTTCGAAGCCTAGTTCTTTCTTGGCTTTCTCTACA
CTGAAGTAATGTGTGACGCCACTTTTATAAACTTCGGTGCGCGTGATGAA
GGCCTGGAAGTTGTACATTCTCGTTCTTATGACGCGACTCATCCCAATCA
TGACAGCCATGTTCCAATTTATGCTTACTTACTTTTTTTTTTTATTCACA
TGCAACTTTCACCCCATCCACTACGTCTTATTCACCCCCAACCCCACGTT
CAGTCTTCTTTCTTACTCCACTTCTCATCCCCCCCCTTTTATTTTTCCTT
TCCCCTTCTTCTATGGGCTCCTTTTTTCTTGTTGTTTCACTCTCTCCCCG
TATTTTCTTCGCCACCATCTATCTACCCGTTATAGCTCTTACTGACTTCG
CCCTATTTCTTTCTCTATCCCTCTCCCTTATTAAACCCTCTTCATTCCAC
TACTCAATATTGTTTTCTATTATTACGTCACGATATTTGTAAAAGAAATA
TTTCTCTATAATTATTCCCATAATTTCATTTTCCTTATTTTTTACCCCCT
TTTTTACTTATCCTTTTCCCTCTCACCCTCTATCCCTTTGCACTTATCTT
GTGTTGTTTG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTGGTCTACAGAGTGAG
TTCCAGGATAGCCAGGGCTACACAAAGAAACCCTGTCTTGAAAAATAAAA
CAATAAATAAATAAATAAATAAACAAACAAATAAATAGATAAATAAAAAT
AAAAAAGGGTTTGATATTTTCATTCATTCACCCAATAAATATTTAAAGAT
GGTCTACCAGGAACGTATGTCAACAGTGACCAGGTCAGGCAAAGGCATCC
ACGGCCCTGCTGAATCCAGGTGAAGATATGTTCTTGGTTGGTTACAACAT
CACGGGACCTTTCAGGTTTCTATGGCATGGACGTATTTATATCTAAATGA
AGTGTGATTGGTGTGGGAACGACAGCATCTGCCCACTATCTCACAGCCTT
CAGTTTTAGCTATGTTCATTCCGAAGTTCTACCTAGCGTATCGTTTTGCG
GGGTAGGATGTGGGCCATCCTTCAGCCCACCATGGCAATATCCACCAAGT
TAGACACAATACTAGCCTCAAAACGGATCAATGTATACTATGGTGCACTA
TGGGGCATTCCTGAAAAGAACATGAGAAATATCTTATCCTGTGATGTAAA
AAATTATCATTGCCCTGCCCATATAACATTTAGCTTACCATGTTGAGCCT
TAAGGTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_j16.g1 MSMg01no103_j16.g1 CHROMAT_FILE:
MSMg01no103_j16.g1 PHD_FILE: MSMg01no103_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:35 2005
         (351 letters)



>mm_chr8_120276297_120277047
          Length = 751

 Score =  648 bits (335), Expect = 0.0
 Identities = 347/351 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctggtctacagagtgagttccaggatagccagggctacacaaagaaaccctgtcttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 acctggtctacagagtgagttccaggatagccagggctacacaaagaaaccctgtcttga 608

                                                                       
Query: 61  aaaataaaacaataaataaataaataaataaacaaacaaataaatagataaataaaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aaaataaaacaataaataaataaataaataaacaaacaaataaatagataaataaaaata 548

                                                                       
Query: 121 aaaaagggtttgatattttcattcattcacccaataaatatttaaagatggtctaccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aaaaagggtttgatattttcattcattcacccaataaatatttaaagatggtctaccagg 488

                                                                       
Query: 181 aacgtatgtcaacagtgaccaggtcaggcaaaggcatccacggccctgctgaatccaggt 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 487 aacgtatgtcaacagtgaccaggtcagggaaaggcatccacggccctgctgaatccaggt 428

                                                                       
Query: 241 gaagatatgttcttggttggttacaacatcacgggacctttcaggtttctatggcatgga 300
           ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 427 gaagacatgttcttggttggttacaacatcacgggacctttcagggttctatggcatgga 368

                                                              
Query: 301 cgtatttatatctaaatgaagtgtgattggtgtgggaacgacagcatctgc 351
           |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 367 cgtatttatatctaaatgaagtgtgattggtgtgggaatgacagcatctgc 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)