Query= MSMg01no106_i20.b1 MSMg01no106_i20.b1 CHROMAT_FILE:
MSMg01no106_i20.b1 PHD_FILE: MSMg01no106_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:09 2005
(573 letters)
>mm_chr8_112173886_112174858
Length = 973
Score = 1015 bits (525), Expect = 0.0
Identities = 562/577 (97%), Gaps = 7/577 (1%)
Strand = Plus / Plus
Query: 1 tcaccaataatagctaatattatttcatctgtccctt--aaaaaaaatccaaagttcaca 58
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 200 tcaccaataatagctaatattatttcatctgt---tttgaaaaaaaatccaaagttcaca 256
Query: 59 tgaaccttgtctggatatctctaaaatttgtctgtatgtctctaaaaattcaacttttca 118
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 257 tgaaccttgtctggatatctctaaaatttgtctgtgtgtctctaaaaattaaacttttca 316
Query: 119 aatataaaattgttaagaaacctaaataaacagtttctttctttctctctttcttttttt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aatataaaattgttaagaaacctaaataaacagtttctttctttctctctttcttttttt 376
Query: 179 tt--aagcttgacttatttattctatacatatgagtacactgtagctgtcttcaggcaca 236
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttttaagcttgacttatttattctatacatatgagtacactgtagctgtcttcaggcaca 436
Query: 237 ccaaaaaagagcaacagtttcttaagatggaaaacccacacaaggacctagtcaggtcac 296
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ccaaaagagagcaacagtttcttaagatggaaaacccacacaaggacctagtcaggtcac 496
Query: 297 ttagctgcaaaggagctgagtttgatcccctgtatcctacgtggtagaaggagagaagtc 356
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 497 ttagctgcaaaggagctgagtttgatcccctggaccctacgtggtagaaggagagaagtc 556
Query: 357 atcctgattgccacatgggtgccgtgaccacaagctaacgtagatgtgtaaataaatggg 416
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 accctgattgccacatgggtgccgtgaccacaagctaacgtagatgtgtaaataaatggg 616
Query: 417 atgagctgtttcgtccccacccccgcctgcatgtatgacgtcatcttttgagccccacaa 476
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 617 atgagctgtttcgtccccacccccgcctgcacgtatgacgtcatcttttgagccccacaa 676
Query: 477 cacctgctcatggcgttcccctgactcttgtctccaggtcatcttcctgacattgttgtt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cacctgctcatggcgttcccctgactcttgtctccaggtcatcttcctgacattgttgtt 736
Query: 537 ctccctgatggcgaaccacatgccgtggcttaacaaa 573
|||||||||||| ||||||||||||||||||||||||
Sbjct: 737 ctccctgatggcaaaccacatgccgtggcttaacaaa 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_i20.g1 MSMg01no106_i20.g1 CHROMAT_FILE:
MSMg01no106_i20.g1 PHD_FILE: MSMg01no106_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:10 2005
(497 letters)
>mm_chr8_112331376_112332276
Length = 901
Score = 698 bits (361), Expect = 0.0
Identities = 393/407 (96%), Gaps = 8/407 (1%)
Strand = Plus / Minus
Query: 97 gagctggagaaatggctcaacagttaagagcactgaatgctcctccagagagggtctggg 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gagctggagaaatggctcaacagttaagagcactgaatgctcctccagagagggtctggg 842
Query: 157 accaacacagcagctaaccagatgtaactccagtgccaaggtatatgacaccctcttctg 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 accaacacagcagctaaccagatgtaactccagtgccaaggtatatgacaccctcttctg 782
Query: 217 gcttctgcagacactgcatgcatatggtgccataggcataaccccacaccagacacccat 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gcttctgcagacactgcatgcatatggtgccataggcataaccccacaccagacacccat 722
Query: 277 acacatatactaaaaataaatctcaaataaaaactgaa----ttgtttaagaaggttttc 332
|||||||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct: 721 acacatatactaaaaataaatctcaaataaaaactgaattgtttgtttaagaaagcattc 662
Query: 333 tttatctatgacacaattactttaaaaaagtagaacaaagtatgtgtgtacgcacacaca 392
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 661 tttatctatgacacaattacttaaaaaaagtagaacaaagtatgtgtgtacgcacacaca 602
Query: 393 gaaagaacagtttgtaattaggaacagatgttctaaagaagctgcagatgag--tgtctc 450
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 601 gaaagaacagtttgtaattaggaacagatgttctaaagaagctgcag--gagaatgtctc 544
Query: 451 ttagaacgcacgagcccttacagccagtactgtgatgatgaaggaga 497
|||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 543 ttagaacgcacgagcctttatagccagtactgtgatgatgaaggaga 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 901
Length adjustment: 10
Effective length of query: 487
Effective length of database: 891
Effective search space: 433917
Effective search space used: 433917
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
