BAC Information

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BAC

Clone NameMSMg01-108D14
Chromosome8 (Build37)
Map Location 80,262,148 - 80,262,494
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039211, LOC384847, Nr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
Downstream geneEG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108D14.T7 (MSMg01no108_d14.b1)MSMg01-108D14.TJ (MSMg01no108_d14.g1)
ACCAG321729AG321730
length695697
length of high quality
(start - end)
351 (47 - 397)219 (85 - 303)
definitionCHROMAT_FILE: MSMg01no108_d14.b1 PHD_FILE: MSMg01no108_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:00 2005CHROMAT_FILE: MSMg01no108_d14.g1 PHD_FILE: MSMg01no108_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGC
GGAATTCAATTCATGACGTGTGGAGGGTAGTGGGGGAACACAAACATCAA
GAAGAACAGCTTGATCTGCACCTCATTCCAGTCTCACAGGGATGCTCACG
AGTTCTCCCTTGAAGGCCACCAAAGGCTTTTCTTTCTCCCCTCTCTCTGT
CTCTGTCTCTCTCTGTCTCTTTCTCCCCTCATCCATGCAAAATAAAAGCC
CAGTGTCTATATTACTCATTGGGTATAGGTAACGTGCTGTATTGAGCCTG
TGTTGGTCTCGGAGCTTAGATGGTCAAATACACTTGACCACTTTTGCACA
AACACTTTCCTTTTACCTGTTGTCCCAGAGTCAAGCCTTCACCATCAGCA
GCTGGAGCAGTGGCACCTGCCCATGTCCCTCTCAGCAATACCTTCTCACG
ATCCGCTCACAGCTGACGCATGCTCTACTGGGCTATTTCTAGACACACCC
AGGAATTCCACTGACATCTAGCTCCTGGCTAATTTTTTTTCAAGATTTTT
AAACCGCTTGTTCAATTATAACACCCCTTTCCTCAATGGATTTTTAATAC
GAAAAACCCGCCAAAAACAAAAATAAAAACTAAAATCACCTAAACAGTAG
GAATAGCCCCTTGACCCAAAAAAATGATAAGCTAAATGGATGGCT
TCTTCCTTTTCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAATTTGATTCAAAT
AATTTTAGAAAGTTTTTAAAGATGATCTTAGTTGCTAGAAAGATGTAATA
AACTTAGAATCAAGAATAGAATGTGGGCTGGTGAGATGGCTCAGTGGGTA
AGAGCATCCGACTGCTCTTCCGAAGGTCTGAAGTTCAAATCCCAGCAACC
ACATGGTGGCTCACAACCATCTGTAACAAGATCTGACGCCCTCTTCTGGA
CCGTCTGAAGACAGCTACAGTGTACTTACTTATAATAAATAATTCAATAA
ATCTTAAAAAAAAAAGCCCCTTTAATTACATTAAAGAATAGAATGTGACT
ACTCCCCAGATTATCAAGCTATATGCTCTATAACAACAAACACTATGAGC
TTTCATAATCTCACTACTGAGAGAATTACATTTGCTACTATTTTGTGCTC
TAGGTATCAACTTTACGCCCCATAATGAACTCACTATCGCCCTCACTTGT
ACCTCTATTGATAATCGTAACGCCATGCCAAAACTCGATGTTTCTGAACC
TTCTAATGACCCTATTATCACTGATTCATTGCTTTTGAACTCTTCTGCCC
ACCTTCGTACTTATTCCAGCTTAACCTGGTATAGGCTCTCTTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_d14.b1 MSMg01no108_d14.b1 CHROMAT_FILE:
MSMg01no108_d14.b1 PHD_FILE: MSMg01no108_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:00 2005
         (351 letters)



>mm_chr8_80261944_80262694
          Length = 751

 Score =  594 bits (307), Expect = e-174
 Identities = 337/347 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcaattcatgacgtgtggagggtagtgggggaacacaaacatcaagaagaacagc 64
           |||||||||  || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcaagccaggaagtgtggagggtagtgggggaacacaaacatcaagaagaacagc 264

                                                                       
Query: 65  ttgatctgcacctcattccagtctcacagggatgctcacgagttctcccttgaaggccac 124
           || ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcatctgcaccgcattccagtttcacagggatgctcacgagttctcccttgaaggccac 324

                                                                       
Query: 125 caaaggcttttctttctcccctctctctgtctctgtctctctctgtctctttctcccctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaaggcttttctttctcccctctctctgtctctgtctctctctgtctctttctcccctc 384

                                                                       
Query: 185 atccatgcaaaataaaagcccagtgtctatattactcattgggtataggtaacgtgctgt 244
           ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 atccatgcacaataaaagcccagtgtctatattactcatcgggtataggtaacgtgctgt 444

                                                                       
Query: 245 attgagcctgtgttggtctcggagcttagatggtcaaatacacttgaccacttttgcaca 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 attgagcctgtgttggtctcggagcttagatgggcaaatacacttgaccacttttgcaca 504

                                                          
Query: 305 aacactttccttttacctgttgtcccagagtcaagccttcaccatca 351
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacactttccttttacctgttgtcccagagtcaagccttcaccatca 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)