Query= MSMg01no108_o16.b1 MSMg01no108_o16.b1 CHROMAT_FILE:
MSMg01no108_o16.b1 PHD_FILE: MSMg01no108_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:55 2005
(666 letters)
>mm_chr8_66746617_66747682
Length = 1066
Score = 1091 bits (564), Expect = 0.0
Identities = 573/576 (99%)
Strand = Plus / Minus
Query: 91 tgggttctttccagcttctggctattataaataaggctgctatgaacatagtggagcatg 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 tgggttctttccagcttctggctattataaataaggctgctatgaacatagtggagcatg 1007
Query: 151 tgtccttcttactggttgggacatcttctggatatatgcccaggagaggtattgcgggat 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1006 tgtccttcttactggttgggacatcttctggatatatgcccaggagaggtattgcaggat 947
Query: 211 cctccggtagtactatgtccaattttctgagtaaccaccagactgatttccagagtggtt 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 cctccggtagtactatgtccaattttctgagtaaccaccagactgatttccagagtggtt 887
Query: 271 gtacaagcttgcaatcccactttttcattatctacctttgaagttcagcactcagctttt 330
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 886 gtacaagcttgcaatcccactttttcattatctacctttgaagttcagcactcatctttt 827
Query: 331 agtcttccatgaaaatagacactatacttggttttggacttctttttaacattttgttca 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 agtcttccatgaaaatagacactatacttggttttggacttctttttaacattttgttca 767
Query: 391 tattacctctaaatacttttgcttatcaggaactttgtgataatcataagtatgtagagt 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tattacctctaaatacttttgcttatcaggaactttgtgataatcataagtatgtagagt 707
Query: 451 caaccttttcctagtaatacatagattgtctgtgcacacatgaatacattacatatgtgt 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 caaccttttcctagtaatacatagattgtctgtgcacacatgaatacattacatatgtgt 647
Query: 511 ggtttttgcttataatcagtcatgggtaggcaatatttgttacattagtgttattttttc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ggtttttgcttataatcagtcatgggtaggcaatatttgttacattagtgttattttttc 587
Query: 571 tttttaagtacattttatgcatttgtgaatatcagcttattttcatttgataaatgaaaa 630
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 586 tttttaagtacattttatgcatttgtgaatatcagtttattttcatttgataaatgaaaa 527
Query: 631 gaatttactttcaattgttatggctgttctttctta 666
||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaatttactttcaattgttatggctgttctttctta 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_o16.g1 MSMg01no108_o16.g1 CHROMAT_FILE:
MSMg01no108_o16.g1 PHD_FILE: MSMg01no108_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:56 2005
(506 letters)
>mm_chr8_66602317_66603224
Length = 908
Score = 890 bits (460), Expect = 0.0
Identities = 496/508 (97%), Gaps = 2/508 (0%)
Strand = Plus / Plus
Query: 1 cttcagcattcctcataacaa-gactttcttagctgtta-agtgatattttaattccatg 58
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 cttcagcattcctcataacaaagactttcttagctgttacagtgatattttaattccatg 260
Query: 59 ggtcaatactcttattttagaaactgtttgctaaaacacataatactgaaatatgatatt 118
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ggtcaatacccttattttagaaactgtttgctaaaacacataatactgaaatgtgatatt 320
Query: 119 gcattttatatatattttctgtaatcaatttcaaaatgtcttcacacatgtgcatatgca 178
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcattttatacatattttctgtaatcaatttcaaaatgtcttcacacatgtgcatatgca 380
Query: 179 cacatacacacatacacggcaaactgttcacatctgctccctttaggaattataccactg 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacacacacatacacggcaaactgttcacatctgctccctttaggaattataccactg 440
Query: 239 acatcctttgcttaatcatacaacttttccattgcgttgaaatttgctgaaataaaaagg 298
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 acatcctttgcataatcatacaacttttccattgctttgaaatttgctgaaataaaaagg 500
Query: 299 ttactaaaatgaatgagttagattaagaaatattgatgcacagtaaaaagtcttcacact 358
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttactaaaatgaatgaattagacaaagaaatattgatgcacagtaaaaagtcttcacact 560
Query: 359 aggacagacttattttatacaaagcagagatgaattgaatacatatttaatagtacacag 418
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggacagacttattttatacaaggcagagatgaattgaatacatatttaatagtacacag 620
Query: 419 gataagaaaaggaaaaatagcagagaaaagaattaaataagctaaaaatgcatgacatca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gataagaaaaggaaaaatagcagagaaaagaattaaataagctaaaaatgcatgacatca 680
Query: 479 aataaagtttcagtgcctcatatggcag 506
||||||||||||||||||||||||||||
Sbjct: 681 aataaagtttcagtgcctcatatggcag 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 908
Length adjustment: 10
Effective length of query: 496
Effective length of database: 898
Effective search space: 445408
Effective search space used: 445408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
