BAC Information

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BAC

Clone NameMSMg01-109K16
Chromosome8 (Build37)
Map Location 56,044,589 - 56,044,770
singlet/doubletsinglet
Overlap geneGpm6a
Upstream geneVegfc, Spcs3, Asb5, Spata4, Wdr17
Downstream geneLOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109K16.T7 (MSMg01no109_k16.b1)MSMg01-109K16.TJ (MSMg01no109_k16.g1)
ACCAG322794AG322795
length1,042726
length of high quality
(start - end)
---183 (70 - 252)
definitionCHROMAT_FILE: MSMg01no109_k16.b1 PHD_FILE: MSMg01no109_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:58 2005CHROMAT_FILE: MSMg01no109_k16.g1 PHD_FILE: MSMg01no109_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCCCCCTTCTCCCCCCCTTTTTTCTCCNCCTGCCCCCCCNNGCCC
CCCCCNCCNCCCCTCCCCCCCCCCCGCTGCCCCGCCGCTCCGCTCTCCCC
TCTCTCTTTCTGCCTCCCTCCCCCTTCCTCTCTTCCCTCTCTCCTCTCTC
TCTCTCCCCCTCACCCTGTATCTCATTTATTTTCTCTCCATCTACGCGCC
CACACGATTCTCCTATCCCACTCGTCCCCCTTATTTCTGCTTCTTCTTCT
CTCATCGCAGTATCGNTAAGCGCTCNCGTCGGCCCTGCACCGCGTAGACT
GCTGTCGCCTCGTCGACGTAACACCGTCCGCACCCTTACGCGCCAGTCGC
TGCGCGCTTAGGCTGATACGCAGGCGCCGCTGCACGACCGACATCAGGAC
GCCGGCGTATGAGGTTGTGGATAAACATATCATATCTATTCATCCGCATA
ATATTTGCTTATGCTTACACGCACGCACCGCTGCGACGTAGTTACGCGAT
ATGCCACGTCGACGCGTCGACGATAAGTAGATGAAGGGTTATAAGTGACG
CTCATGTCGTGGCGGCGTGAGATAGAGAGTAACGATCAAGATCGGCGTAG
CCGCACGTGCGGATCGATATATGCCGACAGAGGCCGTGTGAGCCCGCACG
TTATGAGAGAAATACGCTAATAATGAGGACGGCGAACAACATAAAGAGCG
ACCACGCGCGAGCAGTGAGATAAGGATCATATGCCGCGAGATCATGACTG
TGACGTACTATGTCTGCAGAAGCAAAGCGTCCTGACCTGTCGACGAGCGC
GACCTATCTTACACCCGATGAAATGGACGTAGTCGTTGTTGTCGAGTTGT
ACTAATGCGCTGAAGGAGTAGGTGCGAGACTTGAGCGACGAGTTCACGCT
GCGCAGCCGTCGACGCGCTGGCTACGGACCCATCTCGTAGAGNGAGGACT
GTACGAGTCGATTAGCCAAGGTGGACTAGAGTGAGGAGCAGGCACTGATA
TGACCTCACTGTGAGCACGGAATTCTAGCTAGGTGTAGATAG
NCGATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTTCTGCGAAATTCTTAACTTCTTTTGATGTTCTTAAGATAG
ATGATATGGCGGGGTCATCTGGATAGGAAATCTGTTCTAATTTTGCTGTC
AACTGTCACACTAGCGAAGCCTCAGTTATGGTGAGTGATAAATTCTCAGT
CGTTTATTCTATTCCATCTTATGACATAGGCATTGTTTCATGCACATTAT
CTCACAGATAATGATGACTAGAGTGCATTAAGCTATTCTGAGAGTAACTT
ACAGAGAAACACTGATTTGATGCTTTCATTGAAATACATCAGTTGCTCTG
ATATATTATTAGTTTTCTGAGCTCATTGCTAGTTGATACTTGCTAACTGA
TACTTATTTACTCATTTGTTTCTAAATATAAGTTTCACTACTACCCTTGA
CATGATGTGTTTACTGGATATATTAAAATGTGTGCATTGTTGTATTAAGT
GACTACTGTGTTTGATAGATGGTGAGTACACTAGAACTTTTATTTTTTTA
TGTCTATATTTTAATTTCTTGTATCATATATTGTTGAATTATTATATAAA
AGGGGTTTTATCCACTACCTCTCCTGAAAAAATAAAATTTTAAGCCTCAG
GCTTATCTTTTTTTAAAAAATTATTATTTATTGTTTAACTTAGAAGCTTT
TAAAATTTTTGTTTTTTTGTTTTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_k16.g1 MSMg01no109_k16.g1 CHROMAT_FILE:
MSMg01no109_k16.g1 PHD_FILE: MSMg01no109_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:58 2005
         (183 letters)



>mm_chr8_56044389_56044971
          Length = 583

 Score =  352 bits (182), Expect = e-102
 Identities = 182/182 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttaacttcttttgatgttcttaagatagatgatatggcggggtcatctggataggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttaacttcttttgatgttcttaagatagatgatatggcggggtcatctggataggaa 260

                                                                       
Query: 61  atctgttctaattttgctgtcaactgtcacactagcgaagcctcagttatggtgagtgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctgttctaattttgctgtcaactgtcacactagcgaagcctcagttatggtgagtgat 320

                                                                       
Query: 121 aaattctcagtcgtttattctattccatcttatgacataggcattgtttcatgcacatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattctcagtcgtttattctattccatcttatgacataggcattgtttcatgcacatta 380

             
Query: 181 tc 182
           ||
Sbjct: 381 tc 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)