BAC Information

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BAC

Clone NameMSMg01-109P17
Chromosome8 (Build37)
Map Location 124,924,192 - 124,924,623
singlet/doubletsinglet
Overlap gene5830416A07Rik
Upstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2
Downstream geneIl17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109P17.T7 (MSMg01no109_p17.b1)MSMg01-109P17.TJ (MSMg01no109_p17.g1)
ACCAG323026AG323027
length720728
length of high quality
(start - end)
433 (73 - 505)184 (78 - 261)
definitionCHROMAT_FILE: MSMg01no109_p17.b1 PHD_FILE: MSMg01no109_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:23 2005CHROMAT_FILE: MSMg01no109_p17.g1 PHD_FILE: MSMg01no109_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTATCATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGATCCG
CGGAATTCCAAAGTTTCCAACTTATACGTTTTGGTGACTTTAACTACATT
GTTATGGTTACTTTTTTAGTCCATTGCATATCTCCCCTTGTTTATAAAGT
TTCTCACCAGCATGGTGGCATGATTTCCAGGTGTGAGTAGTGAGGTACTG
GGGACACAAAAAGGTGCCACCCTAGCGTGTCTCCCTGGGCCTGCATCCTG
CACTAAATGAAGCCCGTCTAATCATGCTTCATCGCGCTCTTGGCTCCTGT
CAAGCCTCAGAGGCTGCCTTCTTCTTTGAGTTTTCTTGGCTAGGCTCGTG
TCTCTTTCTCATGTAGACCAAGGCTGTCAGTGTATCTGTCTAGCCTGGGA
ATATCCTCACTGGTTTTTCTAGGGATATACTAATGAGCAGTGCAGGGTGA
ACCCAAATGCTGGTAAGAGTGCTCTGTCACTTCTCACTTAGTTGTTGCTT
TGTGACCTTCAGGGTGAATATGTGTCATTCCAAAGCACCGTCCCTCTGCT
ATCGCAAGTGGTTCTATGCCTCTGCCCTAGTTGTATGTGAGGAGCTAGGT
TTCCGTGTTAGGCTTTTGTCCTGCCTTATTGAGGTGAGTGAGTGATTGTG
TGAATTTGTTCTGTCATGGGCTAATTAGTTTGTAATGCACGGGAAGACTT
ATATATTCCGCTTTTCTGTG
NACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGGACAGGCTGGCTTT
GAACTCAGAGATCTGCCTGCCTCTCTTGGGAGTGCTGGGATTAAAGGCGT
GCGCCATCATGAGACCACCTATCCTGATCTTTTGTTTGTTTGTTTGTTTT
TATTTTTTTCAAGGCAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGTAAC
TTACTTTGTAGACCATGATGGCCTTGAACTCAGAAATCCACCTGCCTCTG
CCTCCCAAGAGCTGGTATTATATTTGTGTGACACCACCGCCCGGCATATC
CTGTTCTTTATATTCGAGATCCCTCTCCTACACTGTGTGTTATATCTCCA
CGCATCTGTTGTTTGAGCTTTCCCTGCGTATCCAGAAACTGATGCCCCCG
ATCCCACTCCTGTGATATTCTACACTACCCATCATATCCTATGTTTTCAA
TGCCTACAATCACATAGTATGACTCCCTCAACAACTGAATTTACTATAAA
TAATATTCTCTTTCTTTTTTATATTACTTTTACCTAACAAAATTATTAAT
ATAATTTCCCTTTATTTACCCTTTCTCCTTTATATATGATTTTTATGTTT
ATTTTTATTTAAAAATAAAGAAAAATACAAATACAACTTAAATTGTTATA
ATACTTTAAACATATTTCATCTCAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_p17.b1 MSMg01no109_p17.b1 CHROMAT_FILE:
MSMg01no109_p17.b1 PHD_FILE: MSMg01no109_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:23 2005
         (433 letters)



>mm_chr8_124923992_124924823
          Length = 832

 Score =  791 bits (409), Expect = 0.0
 Identities = 427/433 (98%), Gaps = 1/433 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatacgttttggtgactttaactacattgttatggttacttttttagtccattgcatatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tatacgttttggtgactttaactacattgttatggttacttttttagtccatttcatatc 260

                                                                       
Query: 61  tccccttgtttataaagtttctcaccagcatggtggcatgatttccaggtgtgagtagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccccttgtttataaagtttctcaccagcatggtggcatgatttccaggtgtgagtagtg 320

                                                                       
Query: 121 aggtactggggacacaaaaaggtgccaccctagcgtgtctccctgggcctgcatcctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtactggggacacaaaaaggtgccaccctagcgtgtctccctgggcctgcatcctgca 380

                                                                       
Query: 181 ctaaatgaagcccgtctaatcatgcttcatcgcgctcttggctcctgtcaagcctcagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 ctaaatgaagcccgtctaatcatgcttcatcgcgctcttggctcctgtcaaacctcagag 440

                                                                       
Query: 241 gctgccttcttctttgagttttcttggctaggctcgtgtctctttctcatgtagaccaag 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgccttcttccttgagttttcttggctaggctcgtgtctctttctcatgtagaccaag 500

                                                                       
Query: 301 gctgtcagtgtatctgtctagcctgggaatatcctcactggtttttctagggatatacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgtcagtgtatctgtctagcctgggaatatcctcactggtttttctagggatatacta 560

                                                                       
Query: 361 atgagcagtgcagggtgaacccaaatgctggtaagagtgctctgtcacttctcacttagt 420
           |||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct: 561 atgagcagtgcagggtgaacccaa-tgctgctaagcgtgctctgtcacttctcacttagt 619

                        
Query: 421 tgttgctttgtga 433
           |||||||||||||
Sbjct: 620 tgttgctttgtga 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 832
Length adjustment: 9
Effective length of query: 424
Effective length of database: 823
Effective search space:   348952
Effective search space used:   348952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)