BAC Information

Click to search

BAC

Clone NameMSMg01-110I05
Chromosome8 (Build37)
Map Location 112,745,373 - 112,745,987
singlet/doubletsinglet
Overlap geneBC025546
Upstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2
Downstream geneHydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110I05.T7 (MSMg01no110_i05.b1)MSMg01-110I05.TJ (MSMg01no110_i05.g1)
ACCAG323420AG323421
length708787
length of high quality
(start - end)
619 (49 - 667)135 (95 - 229)
definitionCHROMAT_FILE: MSMg01no110_i05.b1 PHD_FILE: MSMg01no110_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:07 2005CHROMAT_FILE: MSMg01no110_i05.g1 PHD_FILE: MSMg01no110_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTGCACCTGTGTGAAGCTCCGGGCGCCTTCATCGCTAGCCT
CAACCATTACTTAAAATCTCACCGGTTCCCCTGTGAATGGAGCTGGGTGG
CGAACAGCCTGAATCCATACCACGAGGCAAACGACAATCTTAGGATGATT
ACGGATGACCGGCTGATGGCAAATACCTTGCACTGCTGGTACTTCGGCCC
AGATAATACCGGTGATATCATGACCCTGAAATATCTGACCGGGCTTCAGG
ACTTCCTCAGCGGCATGTCTCCCATTCACTTGGTCACGGCTGATGGCAGC
TTCGATTGCCAAGGAAACCCAGGTGAACAGGAAGCCTTAGTGTCGTCTTT
GCATTACTGCGAAGCTGCCACTGCTCTGATCACTCTTGGAGATGGCGGCT
CTTTTGTTCTAAAGATGTTTACGTTGTTTGAACACTGTTCTGTGAACCTC
ATGTACCTGCTAAATTGTTCTTTTGACCAAGTTCATGTTTTCAAACCTGC
GACTAGCAAGGCAGGAAACTCAGAAGTCTATGTGGTGTGTCTTCGCTATA
AGGGAAGAGAGGCCGTTCAGCCTCTGCTTTCTAGGATGGTGTTGAACTTC
GGCACTGAGATGACCAGGAAGGCGCTCTTTCCCCATCATGTGATCCCCAA
ATCCTTCA
NNAACAAGGGANNNNNTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCCA
ACAGTGAATAAAAGTTCCTATATTTCCACAACCTCACCAGCTGTTTTGTT
GATCCTAGCCATTCTGGTCTTGTTTCTTTATTTGTTCATTCAGTTGGTTG
GTTGGTTGGGATTTTGTGTTTATTGTTGCTGATGATATTACATTTTTATT
TTTTTTTCTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTGTTTTTTATATT
TTTTTTTTAACCATTCTTTTATTTTTTATTATTTCTTATTTTTCTTGCTT
CCAGTCCCTCTCGTAGGACGTGACCCCCTGCCTTTTTTCCTTCTCTCTTC
CCTCCTCTCTCTTTTTTATTCTTTTTTCTTATTGTTCACCCCCCCCCCTA
TTATAATTATTATTTTTCTTTTGATGTCTATGTTTTTTTATCTTAGTTTT
TTTTTTTTTCTTTCTCTTCTTTCATTCCCTTTCTGTTTTCTAATTTTCTT
TTCATATCCTCTCTTTTATTATCTCTCCTTCTTCCCTTTCCCTCTCTCCC
CTTTCCTTCTTATCCTCCCGCGCATATTTTTACTTATTGTTTCGTTACTA
TCGTCTTATTATCTTTACCTCATACCCATATCTTCCTCTTTTTTTCTTGT
ACTTACTATCTGTTCCTCTACATTTTTTACCTATTTTTTTCCTTCTCGAT
TTCATTGCATTTAAGTTCGCATTTATTCTTTGTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_i05.b1 MSMg01no110_i05.b1 CHROMAT_FILE:
MSMg01no110_i05.b1 PHD_FILE: MSMg01no110_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:07 2005
         (619 letters)



>mm_chr8_112745169_112746187
          Length = 1019

 Score = 1166 bits (603), Expect = 0.0
 Identities = 612/615 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgcacctgtgtgaagctccgggcgccttcatcgctagcctcaaccattactt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgcacctgtgtgaagctccgggcgccttcatcgctagcctcaaccattactt 264

                                                                       
Query: 65  aaaatctcaccggttcccctgtgaatggagctgggtggcgaacagcctgaatccatacca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaatctcaccggttcccctgtgaatggagctgggtggcgaacagcctgaatccatacca 324

                                                                       
Query: 125 cgaggcaaacgacaatcttaggatgattacggatgaccggctgatggcaaataccttgca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgaggcaaacgacaatcttaggatgattacggatgaccggctgatggcaaataccttgca 384

                                                                       
Query: 185 ctgctggtacttcggcccagataataccggtgatatcatgaccctgaaatatctgaccgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgctggtacttcggcccagataataccggtgatatcatgaccctgaaatatctgaccgg 444

                                                                       
Query: 245 gcttcaggacttcctcagcggcatgtctcccattcacttggtcacggctgatggcagctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcttcaggacttcctcagcggcatgtctcccattcacttggtcacggctgatggcagctt 504

                                                                       
Query: 305 cgattgccaaggaaacccaggtgaacaggaagccttagtgtcgtctttgcattactgcga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cgattgccaaggaaacccaggtgaacaggaagccttagtgtcgtctttgcattactgcga 564

                                                                       
Query: 365 agctgccactgctctgatcactcttggagatggcggctcttttgttctaaagatgtttac 424
           ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 agctgtcactgctctgatcactcttggagacggcggctcttttgttctaaagatgtttac 624

                                                                       
Query: 425 gttgtttgaacactgttctgtgaacctcatgtacctgctaaattgttcttttgaccaagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttgtttgaacactgttctgtgaacctcatgtacctgctaaattgttcttttgaccaagt 684

                                                                       
Query: 485 tcatgttttcaaacctgcgactagcaaggcaggaaactcagaagtctatgtggtgtgtct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcatgttttcaaacctgcgactagcaaggcaggaaactcagaagtctatgtggtgtgtct 744

                                                                       
Query: 545 tcgctataagggaagagaggccgttcagcctctgctttctaggatggtgttgaacttcgg 604
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 745 tcgctataagggaagagaggccgttcagcctctgctatctaggatggtgttgaacttcgg 804

                          
Query: 605 cactgagatgaccag 619
           |||||||||||||||
Sbjct: 805 cactgagatgaccag 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)