Query= MSMg01no110_l01.b1 MSMg01no110_l01.b1 CHROMAT_FILE:
MSMg01no110_l01.b1 PHD_FILE: MSMg01no110_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:21 2005
(386 letters)
>mm_chr8_95374568_95375353
Length = 786
Score = 690 bits (357), Expect = 0.0
Identities = 367/371 (98%), Gaps = 2/371 (0%)
Strand = Plus / Minus
Query: 5 gaattcctccaaacaccaatgaccctgtctactccgtttaaaaccctagctcacagtagg 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gaattcctccaaacatgaatgaccctgtctactccgtttaaaaccctagctcacagtagg 310
Query: 65 gactttgacagcaatccttaatggagcacctgattatacatggctttctttcttcacttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gactttgacagcaatccttaatggagcacctgattatacatggctttctttcttcacttc 250
Query: 125 ccatggaagctcagggatatgagctttgcagatggtaagagcatccacacccacaccaca 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 249 ccatggaagctcagggatatgagctttgcagatggtaagagcatccacacccacac--ca 192
Query: 185 cacacacacacacacacacacacacacacacacacacacacacacacacacacctttgtg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cacacacacacacacacacacacacacacacacacacacacacacacacacacctttgtg 132
Query: 245 gtgctgaattaaaatctcctctaataagccatgaaagccaaactgagttcatttccagga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gtgctgaattaaaatctcctctaataagccatgaaagccaaactgagttcatttccagga 72
Query: 305 tcctagagagtcacagaagcctccctgggaatatggttttcaaattccaattactgtcct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 tcctagagagtcacagaagcctccctgggaatatggttttcaaattccaattactgtcct 12
Query: 365 gtgctgatgct 375
|||||||||||
Sbjct: 11 gtgctgatgct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space: 292929
Effective search space used: 292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_l01.g1 MSMg01no110_l01.g1 CHROMAT_FILE:
MSMg01no110_l01.g1 PHD_FILE: MSMg01no110_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:21 2005
(252 letters)
>mm_chr8_95261875_95262526
Length = 652
Score = 456 bits (236), Expect = e-133
Identities = 248/252 (98%)
Strand = Plus / Plus
Query: 1 tctctatggcttttgtcatctaatctattgaggttggattgttggaattaatgggattac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctatggcttttgtcatctaatctattgaggttggattgttggaattaatgggattac 260
Query: 61 tgttccactggaggtcaccagctgaccttgttaatgaaatccagagagggaaagtgagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttccactggaggtcaccagctgaccttgttaatgaaatccagagagggaaagtgagtg 320
Query: 121 ttccaagaccaggggcggggggtggggggtcaggctgaagtccagggccagatctgaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccaagaccaggggcggggggtggggggtcaggctgaagtccagggccagatctgaatc 380
Query: 181 cctctgaaagcagtcagccctggcagtcttgagtgagacaatactttccttagagtggtt 240
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||
Sbjct: 381 cctctgaaagcagtcagccctggcagtcttgaatgagacaatactttccttagactgttt 440
Query: 241 ggactctttctg 252
|||||||||||
Sbjct: 441 agactctttctg 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space: 156249
Effective search space used: 156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
