Query= MSMg01no111_f18.b1 MSMg01no111_f18.b1 CHROMAT_FILE:
MSMg01no111_f18.b1 PHD_FILE: MSMg01no111_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:34 2005
(705 letters)
>mm_chr8_60309545_60310649
Length = 1105
Score = 1297 bits (671), Expect = 0.0
Identities = 704/733 (96%), Gaps = 28/733 (3%)
Strand = Plus / Plus
Query: 1 ttagcatccttctcccttcccgcctcaattttccttgctgtgaattttggctctcttgag 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 173 ttagcatccttctcccttcccgcctcaattttcattgctgtgaattttggctctcttgag 232
Query: 61 tcttctttaagcttcatctctgaaattattttgtgctttgccagtccatccctgagtttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tcttctttaagcttcatctctgaaattattttgtgctttgccagtccatccctgagtttt 292
Query: 121 ctcagctctttgttcagaaagttttttcgtattctagccgactcttctgtgagctattct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctcagctctttgttcagaaagttttttcgtattctagccgactcttctgtgagctattct 352
Query: 181 aatcctgactgattttgaaatccttcagctcattttgacatttgcccttaattgtggttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aatcctgactgattttgaaatccttcagctcattttgacatttgcccttaattgtggttt 412
Query: 241 tcttcatatagctacgcatgtacatttccactgcacattggagtgggatttgtctcgttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tcttcatatagctacgcatgtacatttccactgcacattggagtgggatttgtctcgttt 472
Query: 301 ttatctttatccttgttgtaccttagtctggggctttatcacaatctctttttattttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttatctttatccttgttgtaccttagtctggggctttatcacaatctctttttattttct 532
Query: 361 aaatataaattaaatagtttattggactattagaggaaagttcatgtggagtgttctctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aaatataaattaaatagtttattggactattagaggaaagttcatgtggagtgttctctc 592
Query: 421 tctctctctc----------------------------ctctctctctctctctctctct 452
|||||||||| ||||||||||||||||||||||
Sbjct: 593 tctctctctctcctctctctctctctctctctctctctctctctctctctctctctctct 652
Query: 453 ctctctctcagtgttaaacaatactatctttcacaagtcatattcttgtagctccaggct 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ctctctctcagtgttaaacaatactatctttcacaagtcatattcttgtagctccaggct 712
Query: 513 cagacacaaaaacttcctgcctctttgtgtgtgtcttctagatttggaaatatctttcct 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cagacacaaaaacttcctgcctctttgtgtgtgtcttctagatttggaaatatctttcct 772
Query: 573 gttgcttttaaatatgtgtatggttctgtgcgattgatccggctcaaatcctgacatttt 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gttgcttttaaatatgtgtatggttctgtgcgattgatccggctcaaatcctgacatttt 832
Query: 633 gacagcttcggcttgtctctgtggatctccagtacttcattttggatctgatttacaaca 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gacagcttcggcttgtctctgtggatctccagtacttcattttggatctgatttacaaca 892
Query: 693 ggctcttttttag 705
|||||||||||||
Sbjct: 893 ggctcttttttag 905
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 99
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space: 761025
Effective search space used: 761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_f18.g1 MSMg01no111_f18.g1 CHROMAT_FILE:
MSMg01no111_f18.g1 PHD_FILE: MSMg01no111_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:34 2005
(312 letters)
>mm_chr8_60433038_60433752
Length = 715
Score = 464 bits (240), Expect = e-135
Identities = 281/304 (92%), Gaps = 17/304 (5%)
Strand = Plus / Minus
Query: 1 atgctcaaacttcctaaactgggaaacatgatctcttagggaaagaaatggctcttcatg 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 390 atgctcaaacttcctaaactgggaaacatgatctcaaagggaaagaaatggctcttcatg 331
Query: 61 cttcacatggaatgccaagaaagtttttacttattatttgggaaaaaaatcttattgtt- 119
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 330 cttcacatggaatgccaagaaagtatttacttattatttggaaaaaaaatcttattgtta 271
Query: 120 aaaaaaagttct--taagagaaaatggaatagttgtggttcttgttactatcagtgaatc 177
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aaaaaaagttcttataagagaaaatggaatagttgtggttcttgttactatcagtgaatc 211
Query: 178 atgatttgaatagattggactgggctgggctggactaagctgggcttgactgggatgggc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 atgatttgaatagattggactgggctgggctggactaagctgggcttgactgggatgggc 151
Query: 238 ttggctgggatggcatgggatgagatggcatgggataggatgggatggcatgggatggaa 297
| ||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 150 t--------------tgggatgagatgggatgggataggatgggatggcatgggatggga 105
Query: 298 tggg 301
||||
Sbjct: 104 tggg 101
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 715
Length adjustment: 9
Effective length of query: 303
Effective length of database: 706
Effective search space: 213918
Effective search space used: 213918
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
