Query= MSMg01no111_k17.b1 MSMg01no111_k17.b1 CHROMAT_FILE:
MSMg01no111_k17.b1 PHD_FILE: MSMg01no111_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:17 2005
(549 letters)
>mm_chr8_28685250_28686198
Length = 949
Score = 944 bits (488), Expect = 0.0
Identities = 539/568 (94%), Gaps = 22/568 (3%)
Strand = Plus / Plus
Query: 1 catcttgtttatttctgggggcaaga--cccta-tatacccatcacatttattattacaa 57
|||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct: 201 catcttgtttatttctgggggcaagaag---tagtatacccatcacatttattcttacaa 257
Query: 58 aatatggacaacaaaatgtagcaaccagtgactgtcatggttcagtgatttaacaaaatt 117
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 258 aatatggacaacaaaatgtagcaaccagtgactgtcatggttcaatgatttaacaaaatt 317
Query: 118 ccagataaatcctttatcttaattaaaaagtgtgttattactgcgcttctgaacatgatg 177
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 318 ccagataaatcctttatcttaattaaaaagtgtgttattactgcgcttgtgaacatgatg 377
Query: 178 tgtgttggcacatattgggaagttatgacaactatgcgaaattcattctttcctcccact 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgtgttggcacatattgggaagttatgacaactatgcgaaattcattctttcctcccact 437
Query: 238 tttgagttccaaagactgacctcggattaccaggcttgtgtgatatgcaccagcactcag 297
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttgagttgcaaagactgacctcggattaccaggcttgtgtgatatgcaccagcactcag 497
Query: 298 gtgacacttcatattttctactcttttgtttctattttttaaaattaaactataacaaca 357
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtgacatttcatattttctactcttttgtttctattttttaaaattaaactataacaaca 557
Query: 358 ctttcctgttcactttcctcttttcaagcccccacatgctctcctatccctgctcccttt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctttcctgttcactttcctcttttcaagcccccacatgctctcctatccctgctcccttt 617
Query: 418 caaatccatggcttctttttctttgttactgttttacacacacacacacacacacacaca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 caaatccatggcttctttttctttgttactgttttacacacacacacacacacacacaca 677
Query: 478 cacacacacacacacaca----------------cacacacacacacacatatacacaca 521
|||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 678 cacacacacacacacacatacacacacacacacacacacacacacacacacatacacaca 737
Query: 522 ccaagtttgctaccaagtaaacaagaag 549
|||||||||||| |||||||||||||||
Sbjct: 738 ccaagtttgctatcaagtaaacaagaag 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_k17.g1 MSMg01no111_k17.g1 CHROMAT_FILE:
MSMg01no111_k17.g1 PHD_FILE: MSMg01no111_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:17 2005
(526 letters)
>mm_chr8_28859400_28860325
Length = 926
Score = 903 bits (467), Expect = 0.0
Identities = 520/561 (92%), Gaps = 38/561 (6%)
Strand = Plus / Minus
Query: 1 tatattctattctttaatagaccaaccaacac---ccttccaaagttaatgaaactcaat 57
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 876 tatattctattctttaatagaccaaccaacacgtac---ccaaagttaatgaaactcaat 820
Query: 58 tcagaaaagtcagggaaattaccctcaaaaagtagtg----------------------- 94
|||||||||||||||||||||||||||||||||||||
Sbjct: 819 tcagaaaagtcagggaaattaccctcaaaaagtagtggtgtgtgtgtgtgtgtgtgtgtg 760
Query: 95 ---------gtgtgtgtgtgtgtgtgtgtgctcgcacgcgctaataggggattccattac 145
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 759 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttgcacgcgctaataggggattccattac 700
Query: 146 aaactgctgaccccatttggccacacagtggctacctttaaaagtagtgtggggctcaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 aaactgctgaccccatttggccacacagtggctacctttaaaagtagtgtggggctcaaa 640
Query: 206 ttcatgcggacctcatgtctattgaatgtcctgatttctcaaggaagttgctacaatata 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 639 ttcatgcggacctcatgtctattgaatgtcctgatttctcaaggaagttgctacaatgta 580
Query: 266 aatgtgaaaagaacagacgggaggctggtgatgctgttaaagctccgtttctactgtacg 325
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aatgtgaaaaaaacagacgggaggctggtgatgctgttaaagctccgtttctactgtacg 520
Query: 326 gaacgaataagtacctttagcttatctccagtgtgtaaagatttttctctaagcacagat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaacgaataagtacctttagcttatctccagtgtgtaaagatttttctctaagcacagat 460
Query: 386 gacacaccattgataaacatagtttgttttcctacagcatttgtttaaatcaaaatctgc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gacacaccattgataaacatagtttgttttcctacagcatttgtttaaatcaaaatctgc 400
Query: 446 tcagaaaagcaaacaaaattgacatcatttactttgtagtagaggataattcctgagaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tcagaaaagcaaacaaaattgacatcatttactttgtagtagaggataattcctgagaaa 340
Query: 506 gattccacctaaacttagtaa 526
|||||||||||||||||||||
Sbjct: 339 gattccacctaaacttagtaa 319
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
