Query= MSMg01no111_l09.b1 MSMg01no111_l09.b1 CHROMAT_FILE:
MSMg01no111_l09.b1 PHD_FILE: MSMg01no111_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:22 2005
(710 letters)
>mm_chr8_130938706_130939815
Length = 1110
Score = 998 bits (516), Expect = 0.0
Identities = 528/532 (99%), Gaps = 1/532 (0%)
Strand = Plus / Minus
Query: 1 ttaaatgttagatttacaggtgtgagacaccttgtccagcctagggagtgtaagtttaca 60
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 532 ttaaatgttagatttacacgtgtgagacaccatgtccagcctagggagtgtaagtttaca 473
Query: 61 gtgga-tttttaaaaaaaatattattcataaggcaatcaacccttttgggtggacattct 119
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gtggatttttttaaaaaaatattattcataaggcaatcaacccttttgggtggacattct 413
Query: 120 ccctctattggaatcctctaccttcaaagtcttccctgtgtgactaaagtggctgaccag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ccctctattggaatcctctaccttcaaagtcttccctgtgtgactaaagtggctgaccag 353
Query: 180 atatgtatttccttgaaaagcaacacaaagatccatgtagtcttctgcaattaaaagaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 atatgtatttccttgaaaagcaacacaaagatccatgtagtcttctgcaattaaaagaga 293
Query: 240 tagtccctgtcttagtcagggtttctattcctgcacaaaacatcatgactaagaagcaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tagtccctgtcttagtcagggtttctattcctgcacaaaacatcatgactaagaagcaag 233
Query: 300 ttgggaaggaaagggtttattcagcttacactttccacactgctgttgatcaccaaagga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ttgggaaggaaagggtttattcagcttacactttccacactgctgttgatcaccaaagga 173
Query: 360 agtcaggacttgaactcaagcaggtcaggaagcaggagctgatgcagaggccatggaggg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 agtcaggacttgaactcaagcaggtcaggaagcaggagctgatgcagaggccatggaggg 113
Query: 420 atgttacttactggcctgcttcccctggtttgctcagcttgctttcttatagaatccagg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 atgttacttactggcctgcttcccctggtttgctcagcttgctttcttatagaatccagg 53
Query: 480 accaccagtccaggggtggcaccacccacaatgggctgagccctctcctctt 531
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 accaccagtccaggggtggcaccacccacaatgggctgagccctctcctctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space: 770000
Effective search space used: 770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_l09.g1 MSMg01no111_l09.g1 CHROMAT_FILE:
MSMg01no111_l09.g1 PHD_FILE: MSMg01no111_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:23 2005
(444 letters)
>mm_chr8_130843643_130844486
Length = 844
Score = 764 bits (395), Expect = 0.0
Identities = 427/447 (95%), Gaps = 17/447 (3%)
Strand = Plus / Plus
Query: 1 gacccactaggggagagttactgccaccactgacccagggtgaagacttgatattctaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacccactaggggagagttactgccaccactgacccagggtgaagacttgatattctaaa 260
Query: 61 ttgcctaaaatatgatatattattgtcttctctctaaagagagggggaggccacttctta 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcctaaaatatgatgtattattgtcttctctctaaagagagggggaggccacttctta 320
Query: 121 caaaatgaatatagctgatgacatgttacagaaatggatggaataatcatcctttaatgg 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaatgaatatagctgatgacatgctacagaaatggatggaataatcatcctttaatgg 380
Query: 181 agtggtatgcttatgtgccctggaagctcctccttcagttcagctcagttgcttacagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtggtatgcttatgtgccctggaagctcctccttcagttcagctcagttgcttacagac 440
Query: 241 ctccagtgcttagaaaagctattgaaatcaaacattctctcacacacacacacacacaca 300
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ctccagtgcttagaaaagctattgaaatcaaaca------cacacacacacacacacaca 494
Query: 301 cacacacacacacacacacaaacacactcatgcactttcttttcttttttctggttcctc 360
||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 495 cacacacacacacacacac--------tcatgcactttcttttcttttttctggttcctc 546
Query: 361 actttttgcctgaagtatccctgcccccccac---ctcctcccccctccttgcaaatgtt 417
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 547 actctttgcctgaagtatccctgcccccccacttcctcctcccccctccttgcaaatgtt 606
Query: 418 gcttacagacttatctctaactcaaaa 444
|||||||||||||||||||||||||||
Sbjct: 607 gcttacagacttatctctaactcaaaa 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|