BAC Information

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BAC

Clone NameMSMg01-111L09
Chromosome8 (Build37)
Map Location 130,843,843 - 130,939,237
singlet/doubletdoublet
Overlap geneNrp1
Upstream genePard3, EG628847
Downstream geneLOC668494, Itgb1, LOC100042659, LOC100042667, Ccdc7, 1700008F21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111L09.T7 (MSMg01no111_l09.b1)MSMg01-111L09.TJ (MSMg01no111_l09.g1)
ACCAG324313AG324314
length1,1741,208
length of high quality
(start - end)
710 (89 - 798)444 (119 - 562)
definitionCHROMAT_FILE: MSMg01no111_l09.b1 PHD_FILE: MSMg01no111_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:22 2005CHROMAT_FILE: MSMg01no111_l09.g1 PHD_FILE: MSMg01no111_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,938,706 - 130,939,237)(130,843,843 - 130,844,275)
sequence
ATGATCTNNNNNNGGCAGTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTGTTTGCTCTTAACCTTAACATGTTTTAAATGTTAGA
TTTACAGGTGTGAGACACCTTGTCCAGCCTAGGGAGTGTAAGTTTACAGT
GGATTTTTAAAAAAAATATTATTCATAAGGCAATCAACCCTTTTGGGTGG
ACATTCTCCCTCTATTGGAATCCTCTACCTTCAAAGTCTTCCCTGTGTGA
CTAAAGTGGCTGACCAGATATGTATTTCCTTGAAAAGCAACACAAAGATC
CATGTAGTCTTCTGCAATTAAAAGAGATAGTCCCTGTCTTAGTCAGGGTT
TCTATTCCTGCACAAAACATCATGACTAAGAAGCAAGTTGGGAAGGAAAG
GGTTTATTCAGCTTACACTTTCCACACTGCTGTTGATCACCAAAGGAAGT
CAGGACTTGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCA
TGGAGGGATGTTACTTACTGGCCTGCTTCCCCTGGTTTGCTCAGCTTGCT
TTCTTATAGAATCCAGGACCACCAGTCCAGGGGTGGCACCACCCACAATG
GGCTGAGCCCTCTCCTCTTGAGCACTAATTGAGAAAATGCCTTACCGCTG
GATCTCATGGAGGCATTTCCTCACCTGAAGCTTCTTTCTGTGTGATAACT
CCAGCTTGTGTCAAGTTGACACAAAAACCAGCCAGTATAGTCCCACAGGT
GCTGAGTTCCAGGGTGACAGCTGACAGATCTTTCCTTGACTGTTCTTGGC
CTTAGAATCTAAACCCTTTACAAGTCATAGTCCTTTGTCCGCATTAACCC
CCCAACCTTACTCTACCTGGTGAAATATCTCTAAACCTATTCATCCATGA
AAAAAAGAATAAAGATTTCCTTCTAAAATTCCTGCAAGAATGGCGATGGT
ATGCAGGCCATAGTGGTGCATGGTTTTAATCCCTAGCATTTGGGAAGAAG
AGGCTTGAAGGAATCTCTATGAATTCCCAGGCCGGAATGGTCCTACAGAA
ACCAGTTTCCGGGAACGCCCCGGGACTACTTTTTTAAGAGAAAACCCCGG
TTCTCCAAATTTAATTAAATTTAAAAATAAAAAAAGGGAATGGGCCCAAG
GGAAAAAATTTTCCCCTTTTTCCT
TTTACTCATGCGTAGCTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCCTTTAAATATTACATGAAAGGGAAGAGGTGGGGG
GAGCCCGTAATTTGTTGAGACCCACTAGGGGAGAGTTACTGCCACCACTG
ACCCAGGGTGAAGACTTGATATTCTAAATTGCCTAAAATATGATATATTA
TTGTCTTCTCTCTAAAGAGAGGGGGAGGCCACTTCTTACAAAATGAATAT
AGCTGATGACATGTTACAGAAATGGATGGAATAATCATCCTTTAATGGAG
TGGTATGCTTATGTGCCCTGGAAGCTCCTCCTTCAGTTCAGCTCAGTTGC
TTACAGACCTCCAGTGCTTAGAAAAGCTATTGAAATCAAACATTCTCTCA
CACACACACACACACACACACACACACACACACACACAAACACACTCATG
CACTTTCTTTTCTTTTTTCTGGTTCCTCACTTTTTGCCTGAAGTATCCCT
GCCCCCCCACCTCCTCCCCCCTCCTTGCAAATGTTGCTTACAGACTTATC
TCTAACTCAAAAAAAAAAGACAAGAACAAGAATAAGATAAAGAAAAATGT
GACTTTCTTCTGCTTCTGCATCCCTGTCTCACCAACTTCTTGGATTTACA
TCCTACTTACCCTGTTTTTTTTTTCTCTCAAACTGATATAAGATGGTCCC
AAGCTTCCTTCTAAGTCTTGTTTTTAAATTCTTCTATATAAAAAAAGTCT
AAAACCCTCCAAGAGAATTCTTGACTCCTTGATAACTCTATAAAGATCCT
GACATATTGTACTAAGATGAAATTGGAACAAAATCTATTCTACAGGCGAT
CCAAGGGCAGCTTTCTCCAAAAACCCATATCTTATTGGTATTTTAATTAT
AATTTTAATGGCCGTCAATAGTCGTCCACTTTACCCTTTGCTTCCGCAAA
CCCACGGACTATGGTTTTGACCGGGATCTCCTTGTTCCTAATTGGTTTGG
CCCGAAAACAGGGTTCTCGCCTTTTCTACTCCTCCCTTGTCTTTGGAAAC
TTCTTTGATCCCTCCCTGGCTCTCCTACCTCCCCTGGTTTATTGACAAAA
TTAATGGTCTTCTCCATCCTCACGACACAAAAATTTTCCCCTTCTTAAAA
TACCTATTTTTCCTCCCTCTGAATATGACCGGGCCTCTTCTCTGTGTGAC
ATATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_l09.b1 MSMg01no111_l09.b1 CHROMAT_FILE:
MSMg01no111_l09.b1 PHD_FILE: MSMg01no111_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:22 2005
         (710 letters)



>mm_chr8_130938706_130939815
          Length = 1110

 Score =  998 bits (516), Expect = 0.0
 Identities = 528/532 (99%), Gaps = 1/532 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaatgttagatttacaggtgtgagacaccttgtccagcctagggagtgtaagtttaca 60
           |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 532 ttaaatgttagatttacacgtgtgagacaccatgtccagcctagggagtgtaagtttaca 473

                                                                       
Query: 61  gtgga-tttttaaaaaaaatattattcataaggcaatcaacccttttgggtggacattct 119
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gtggatttttttaaaaaaatattattcataaggcaatcaacccttttgggtggacattct 413

                                                                       
Query: 120 ccctctattggaatcctctaccttcaaagtcttccctgtgtgactaaagtggctgaccag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ccctctattggaatcctctaccttcaaagtcttccctgtgtgactaaagtggctgaccag 353

                                                                       
Query: 180 atatgtatttccttgaaaagcaacacaaagatccatgtagtcttctgcaattaaaagaga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 atatgtatttccttgaaaagcaacacaaagatccatgtagtcttctgcaattaaaagaga 293

                                                                       
Query: 240 tagtccctgtcttagtcagggtttctattcctgcacaaaacatcatgactaagaagcaag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tagtccctgtcttagtcagggtttctattcctgcacaaaacatcatgactaagaagcaag 233

                                                                       
Query: 300 ttgggaaggaaagggtttattcagcttacactttccacactgctgttgatcaccaaagga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ttgggaaggaaagggtttattcagcttacactttccacactgctgttgatcaccaaagga 173

                                                                       
Query: 360 agtcaggacttgaactcaagcaggtcaggaagcaggagctgatgcagaggccatggaggg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 agtcaggacttgaactcaagcaggtcaggaagcaggagctgatgcagaggccatggaggg 113

                                                                       
Query: 420 atgttacttactggcctgcttcccctggtttgctcagcttgctttcttatagaatccagg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 atgttacttactggcctgcttcccctggtttgctcagcttgctttcttatagaatccagg 53

                                                               
Query: 480 accaccagtccaggggtggcaccacccacaatgggctgagccctctcctctt 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  accaccagtccaggggtggcaccacccacaatgggctgagccctctcctctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space:   770000
Effective search space used:   770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no111_l09.g1 MSMg01no111_l09.g1 CHROMAT_FILE:
MSMg01no111_l09.g1 PHD_FILE: MSMg01no111_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:23 2005
         (444 letters)



>mm_chr8_130843643_130844486
          Length = 844

 Score =  764 bits (395), Expect = 0.0
 Identities = 427/447 (95%), Gaps = 17/447 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacccactaggggagagttactgccaccactgacccagggtgaagacttgatattctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacccactaggggagagttactgccaccactgacccagggtgaagacttgatattctaaa 260

                                                                       
Query: 61  ttgcctaaaatatgatatattattgtcttctctctaaagagagggggaggccacttctta 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcctaaaatatgatgtattattgtcttctctctaaagagagggggaggccacttctta 320

                                                                       
Query: 121 caaaatgaatatagctgatgacatgttacagaaatggatggaataatcatcctttaatgg 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaatgaatatagctgatgacatgctacagaaatggatggaataatcatcctttaatgg 380

                                                                       
Query: 181 agtggtatgcttatgtgccctggaagctcctccttcagttcagctcagttgcttacagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtggtatgcttatgtgccctggaagctcctccttcagttcagctcagttgcttacagac 440

                                                                       
Query: 241 ctccagtgcttagaaaagctattgaaatcaaacattctctcacacacacacacacacaca 300
           ||||||||||||||||||||||||||||||||||      ||||||||||||||||||||
Sbjct: 441 ctccagtgcttagaaaagctattgaaatcaaaca------cacacacacacacacacaca 494

                                                                       
Query: 301 cacacacacacacacacacaaacacactcatgcactttcttttcttttttctggttcctc 360
           |||||||||||||||||||        |||||||||||||||||||||||||||||||||
Sbjct: 495 cacacacacacacacacac--------tcatgcactttcttttcttttttctggttcctc 546

                                                                       
Query: 361 actttttgcctgaagtatccctgcccccccac---ctcctcccccctccttgcaaatgtt 417
           ||| ||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 547 actctttgcctgaagtatccctgcccccccacttcctcctcccccctccttgcaaatgtt 606

                                      
Query: 418 gcttacagacttatctctaactcaaaa 444
           |||||||||||||||||||||||||||
Sbjct: 607 gcttacagacttatctctaactcaaaa 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)