BAC Information

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BAC

Clone NameMSMg01-112D11
Chromosome8 (Build37)
Map Location 74,061,534 - 74,162,609
singlet/doubletdoublet
Overlap gene1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a
Upstream geneEll, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2
Downstream geneJak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112D11.T7 (MSMg01no112_d11.b1)MSMg01-112D11.TJ (MSMg01no112_d11.g1)
ACCAG324686AG324687
length727726
length of high quality
(start - end)		613 (45 - 657)648 (77 - 724)
definitionCHROMAT_FILE: MSMg01no112_d11.b1 PHD_FILE: MSMg01no112_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:18 2005CHROMAT_FILE: MSMg01no112_d11.g1 PHD_FILE: MSMg01no112_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,061,534 - 74,062,143)(74,161,962 - 74,162,609)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACTCATATTCCTGGCCTTCGCTGGCCAGTCACCTGGTGCCTGTGG
GCTTGGGACTCGACTTAACAGTGGCTGTCCGCCGGGCGGTGGTGGCGCAC
GCCTTTAACCCCAGCACTTGGGAGGCAGAGACAGGCCGGTTGTCGGTTTG
GTCTCCTAGAAGGGGAACTAAGACTTCAAGGTTCAGTTGTGGACTGAAGA
CCAAAGGCCAAGGTTTGAGGTCAGGGGTCTCCATTCACGAAAGGATCGTG
GGAGCTATTGAGAATCTGTATATTGAGAATAGTGGCTACAGAGCAGCGGG
CAGGAAACCAAGCCTGGCCAGGTAGCAAAGTGTGCCTCCCAGCTCTTGTC
CTGGCATCAGGAGCAACCTGGCGGGGAAAACCTGCCTGCGGGAAAACCTC
TGTGAACGGGGTAAAAAAGGAGTGTTTCAGTGAGCACCAGGCACTCATAG
AGGGCTTGGCCTGGCTTTGGGCAAAAGTGACATGAAGCATGACCTGGAGT
TAGCATAGGGGTTGTCCTTGATTTCCTATCCTTCTGTCTCTGCCTCCCGA
GTGCTGGGATGGCAGGTGTGCTCCACTACTCTGGAATCCTCCCTGGCTCC
GCTGAATGTCCTGAATGGTATCTACCTCAAAACACCATGGAGTCTTTACT
GAGGATCCTTAGGGTAGACCATATTCA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGCCAGGGCTTTCTGAGCTACC
AGAGTGAAAGGGAGCAATCACGGTATCCAAACGTTTGCCCAGTGACCCAC
AGACCCCTCAGTAAAACCATCCCCTCCAACAATTCTCTATGGGTCAGGCG
AGGCCACCATGACATTTTACTTTGTCCCAAACTCACCTTCCCAGAGGACG
CAGCATGGCATCATGCCCAGTGCCCAGGTTGTAGTTGTAGGCAAACCGTA
AAGGAAAACAAGACACTGACAGCTTGTGACAAGCCAGTGCCTGTCACAGC
TTACCTTCATGACAGCCCTCTGAGGGAAGTCTCAATACAATCAATCTAGT
GGGAAAAGCCAAGGCTGGGAGGGAGAGCAGCCTTCTGGCTCAGGCCATAG
CTTAGTGATGGCGTCAGTTTGGATCTGTCTCAGTGCAGACCGGGGATGCT
TCTGTTAATCTGGGATCCAGCAGGTTTCTTTGTACACCAAATGTAAATGG
CTTGTATTTTGACAGTGGCGTTTACCTTGTGCTCTTGCTGGCTCTGGCCC
TGGCACTCTTCTCCTCCTCTTTCTCCCCATCCCCTTCCCTCACCTTTCAT
CTCCCTTCCCATCCTTCCTCTCCCTCCTCTTCCTGGATTTCTCCCACCCC
CCCATGTCTGTCTCTCCCTTCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_d11.b1 MSMg01no112_d11.b1 CHROMAT_FILE:
MSMg01no112_d11.b1 PHD_FILE: MSMg01no112_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:18 2005
         (613 letters)



>mm_chr8_74061331_74062343
          Length = 1013

 Score = 1156 bits (598), Expect = 0.0
 Identities = 607/610 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaactcatattcctggccttcgctggccagtcacctggtgcctgtgggcttggg 63
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaactcaaattcttggccttcgctggccagtcacctggtgcctgtgggcttggg 263

                                                                       
Query: 64  actcgacttaacagtggctgtccgccgggcggtggtggcgcacgcctttaaccccagcac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actcgacttaacagtggctgtccgccgggcggtggtggcgcacgcctttaaccccagcac 323

                                                                       
Query: 124 ttgggaggcagagacaggccggttgtcggtttggtctcctagaaggggaactaagacttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgggaggcagagacaggccggttgtcggtttggtctcctagaaggggaactaagacttc 383

                                                                       
Query: 184 aaggttcagttgtggactgaagaccaaaggccaaggtttgaggtcaggggtctccattca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaggttcagttgtggactgaagaccaaaggccaaggtttgaggtcaggggtctccattca 443

                                                                       
Query: 244 cgaaaggatcgtgggagctattgagaatctgtatattgagaatagtggctacagagcagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cgaaaggatcgtgggagctattgagaatctgtatattgagaatagtggctacagagcagc 503

                                                                       
Query: 304 gggcaggaaaccaagcctggccaggtagcaaagtgtgcctcccagctcttgtcctggcat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gggcaggaaaccaagcctggccaggtagcaaagtgtgcctcccagctcttgtcctggcat 563

                                                                       
Query: 364 caggagcaacctggcggggaaaacctgcctgcgggaaaacctctgtgaacggggtaaaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caggagcaacctggcggggaaaacctgcctgcgggaaaacctctgtgaacggggtaaaaa 623

                                                                       
Query: 424 aggagtgtttcagtgagcaccaggcactcatagagggcttggcctggctttgggcaaaag 483
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 624 aggagtgtttcagtgagcaccaggcactcagagagggcttggcctggctttgggcaaaag 683

                                                                       
Query: 484 tgacatgaagcatgacctggagttagcataggggttgtccttgatttcctatccttctgt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgacatgaagcatgacctggagttagcataggggttgtccttgatttcctatccttctgt 743

                                                                       
Query: 544 ctctgcctcccgagtgctgggatggcaggtgtgctccactactctggaatcctccctggc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctctgcctcccgagtgctgggatggcaggtgtgctccactactctggaatcctccctggc 803

                     
Query: 604 tccgctgaat 613
           ||||||||||
Sbjct: 804 tccgctgaat 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no112_d11.g1 MSMg01no112_d11.g1 CHROMAT_FILE:
MSMg01no112_d11.g1 PHD_FILE: MSMg01no112_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:18 2005
         (648 letters)



>mm_chr8_74161881_74162928
          Length = 1048

 Score = 1253 bits (648), Expect = 0.0
 Identities = 648/648 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgccagggctttctgagctaccagagtgaaagggagcaatcacggtatccaaacgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 catgccagggctttctgagctaccagagtgaaagggagcaatcacggtatccaaacgttt 670

                                                                       
Query: 61  gcccagtgacccacagacccctcagtaaaaccatcccctccaacaattctctatgggtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gcccagtgacccacagacccctcagtaaaaccatcccctccaacaattctctatgggtca 610

                                                                       
Query: 121 ggcgaggccaccatgacattttactttgtcccaaactcaccttcccagaggacgcagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ggcgaggccaccatgacattttactttgtcccaaactcaccttcccagaggacgcagcat 550

                                                                       
Query: 181 ggcatcatgcccagtgcccaggttgtagttgtaggcaaaccgtaaaggaaaacaagacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ggcatcatgcccagtgcccaggttgtagttgtaggcaaaccgtaaaggaaaacaagacac 490

                                                                       
Query: 241 tgacagcttgtgacaagccagtgcctgtcacagcttaccttcatgacagccctctgaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgacagcttgtgacaagccagtgcctgtcacagcttaccttcatgacagccctctgaggg 430

                                                                       
Query: 301 aagtctcaatacaatcaatctagtgggaaaagccaaggctgggagggagagcagccttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aagtctcaatacaatcaatctagtgggaaaagccaaggctgggagggagagcagccttct 370

                                                                       
Query: 361 ggctcaggccatagcttagtgatggcgtcagtttggatctgtctcagtgcagaccgggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggctcaggccatagcttagtgatggcgtcagtttggatctgtctcagtgcagaccgggga 310

                                                                       
Query: 421 tgcttctgttaatctgggatccagcaggtttctttgtacaccaaatgtaaatggcttgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgcttctgttaatctgggatccagcaggtttctttgtacaccaaatgtaaatggcttgta 250

                                                                       
Query: 481 ttttgacagtggcgtttaccttgtgctcttgctggctctggccctggcactcttctcctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttttgacagtggcgtttaccttgtgctcttgctggctctggccctggcactcttctcctc 190

                                                                       
Query: 541 ctctttctccccatccccttccctcacctttcatctcccttcccatccttcctctccctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ctctttctccccatccccttccctcacctttcatctcccttcccatccttcctctccctc 130

                                                           
Query: 601 ctcttcctggatttctcccacccccccatgtctgtctctcccttctct 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ctcttcctggatttctcccacccccccatgtctgtctctcccttctct 82


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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