BAC Information

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BAC

Clone NameMSMg01-112I23
Chromosome8 (Build37)
Map Location 85,714,858 - 85,715,147
singlet/doubletsinglet
Overlap geneTbc1d9
Upstream geneIl15, EG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688
Downstream geneUcp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112I23.T7 (MSMg01no112_i23.b1)MSMg01-112I23.TJ (MSMg01no112_i23.g1)
ACCAG324939AG324940
length749689
length of high quality
(start - end)
290 (75 - 364)54 (71 - 124)
definitionCHROMAT_FILE: MSMg01no112_i23.b1 PHD_FILE: MSMg01no112_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:45 2005CHROMAT_FILE: MSMg01no112_i23.g1 PHD_FILE: MSMg01no112_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGA
ATTCCTCACAAATTTCGCCTGAAGCCACACTTCAGAATTGTGGGTACCTG
TACTGTGGGGCTTAGAAAGAGGCCCAAAGGGAGAGAGCATCTATTATAGC
TCTAGCTATAGCATTCCTATATTATAGCCTGGGTAGTTAACAAGGGTTCA
AGACAGCTTGACCAAAACACTCAGCTAGCTTGTGTATTTTTTGTTGCTTG
ACAACAGATAATTTATAAAGAGTACAGGTTCAGTGTTTGGATAAGTGTCC
CTGAAAGCCCACTTAGTAAAAGGTTTGGTCCTAGGGTAGCACTCTTGGGA
GATGGTGGAATCTCCAAGAGGCACACCCGCACTGGAGGTTTTGGGGCAGC
TCTTACAAGGGATTCTGCCACTATTTTCTCTGACAATGAGATAATCCATT
TTCGCTCTCATGTGTCTCCTACCACTGACACCTGGCACCCCAACAGATAC
CTGAAGCGGTGAGTCTGCTGTTGGACTGCACTCTGCTAGCCACTGATACA
GCTTCTCACTTAGGAGTTCAAATCTTACACGTTTTTCGGCACCATTGTGC
ACCTAACTGATAGATTTCTTCGCTCTTGCTCCTGGATCCTGCGCGTGTGT
GTTGCGCGCGCGCTTGTGCGCGTGTCTTTTTTTCCCCCCCCCTTTCTCTC
TTCCCCCCTCCCTCCTTTTTCTTTTCCCCTTTCCCTTCCCTATCCCCCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTGCGAATAGTCAGGATGCCATCTGCTCGGTTTCCAACCTG
TATGCTTCAGTTTGTAAGCCACTTGTAGTGTTTCCATTTGTCGCAGCCAG
CTGACAGGGACAGCTGGGCGCGCTCTCAACCAAGGTTGAGAAGAGCTCAT
TTTTTGGTAAGCCCCATCTGAAGCGTGGTAGACTTGAAATTGCTGCCCGG
TTGCCCCCTTTAATCTTGAACTCCTTTGCCCCAAGTTCCAGGGTATGAAC
ACCGCGAAGTCTGAACCCCAATTTTTTTTAATCCATAAACCCTTGGCGCC
AACACAGGAAAAGGGGGGCTTTTTCTTTTTTTCCCCCTTCTCCATAACCC
TTGGTGCCCCTGCAATCCTGGGTACACACACTTTTTCTAACCTTCCTCCC
CCCCTTCTTTCCGCTTTCCCTTTTTTTCCCTCGTTCCCCCTTTTCCCCCT
TTTTTTTTTTTTCCCCTTTTTTCCCCCTGTCCCTGGTCCTATTTTATTCC
CACCTTATTCTCCTCCTTTCCCACCCCCCCCCCTTTTTCCTCCTCCTCCC
TCTCTCTCCCCTTCTCTTCTTATCTTCCCCTTTCCCTCTCTTTCCCCTAT
CCTCTCTTTCCTTTCCTTTCTTACTTTTTCCCTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_i23.b1 MSMg01no112_i23.b1 CHROMAT_FILE:
MSMg01no112_i23.b1 PHD_FILE: MSMg01no112_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:45 2005
         (290 letters)



>mm_chr8_85714658_85715347
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacacttcagaattgtgggtacctgtactgtggggcttagaaagaggcccaaagggaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 ccacacttcagaattgtgggtacctgtactgtggggcttagaaagaggcagaaagggaga 260

                                                                       
Query: 61  gagcatctattatagctctagctatagcattcctatattatagcctgggtagttaacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagcatctattatagctctagctatagcattcctatattatagcctgggtagttaacaag 320

                                                                       
Query: 121 ggttcaagacagcttgaccaaaacactcagctagcttgtgtattttttgttgcttgacaa 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttcaagacagtttgaccaaaacactcagctagcttgtgtattttttgttgcttgacaa 380

                                                                       
Query: 181 cagataatttataaagagtacaggttcagtgtttggataagtgtccctgaaagcccactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagataatttataaagagtacaggttcagtgtttggataagtgtccctgaaagcccactt 440

                                                             
Query: 241 agtaaaaggtttggtcctagggtagcactcttgggagatggtggaatctc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtaaaaggtttggtcctagggtagcactcttgggagatggtggaatctc 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)