BAC Information

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BAC

Clone NameMSMg01-113C13
Chromosome8 (Build37)
Map Location 83,786,909 - 83,787,101
singlet/doubletsinglet
Overlap genenone
Upstream geneGypa, Frem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010
Downstream geneLOC384852, Inpp4b, LOC671182
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113C13.T7 (MSMg01no113_c13.b1)MSMg01-113C13.TJ (MSMg01no113_c13.g1)
ACCAG325377AG325378
length708703
length of high quality
(start - end)
434 (75 - 508)193 (92 - 284)
definitionCHROMAT_FILE: MSMg01no113_c13.b1 PHD_FILE: MSMg01no113_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:31 2005CHROMAT_FILE: MSMg01no113_c13.g1 PHD_FILE: MSMg01no113_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGAAGCCGCGGAA
TTCCATCTAATTCTCCTGGAATGTTGTAGAAGAAGAGGGCAGAAAGATTT
TAAGAACCCCAGGACCAAGAAATCTGGTGTGAGACTGTGTCTTCTAGAAA
AGGCTTCCCAAAATGACCCAAACAGTGACAATATCAATAGACATGCTTAT
GCAGATAGGAGGGTGAATCTCACAGGATTCCATCCATAGACTAAGACCTA
CAAGTGTGACTGCTGAGAGAGACAGAACTATTCTTTCCCAGAGATAAACT
TCTTTATGGTTTTACCTGATACCAATTGGTCATCCCTGAAATCACATTCA
CACAAACTTTAAGAACAGACTCAGCAAGTTTTTGTTGTATATTTGTGCAT
GTGTGTGTGCATGTATGCACGTACATGAATGTGCCTGTGCATGCAGCATG
TGTGCAAGCATGTAACACTGATAATCAAAGAAAAAGTGGCCAGAACATCA
TTTGTTCTGTAGCTTAGTGGGGCCCGAGAAGATTTAAAAGGTGGGAAAAT
GGTAAAGGTAAGAAGGAGAGTAAACGGGGAACATGACGTAAATATGTTTA
AACAGATAGAAATATTCCTCCAAAAAACTGAAGTTATTATCTTATGCCAT
CAGTATGGAGTCTTAAAAACAATACACACGCACATATTTTTTATACACAC
ATATACCT
ACTGTGATACGCCTGGCGACGCCTGTTCTCCAAAAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTGCCTGAGAGAATGACGAGTATTTCAAAATG
CTAGTTTCAAGATATGGCAGCCATTAACCAGACATGTAGTTTAATGCTAC
TTTTGGAGTATATTTTCTGTTAATGATGTTCAATTCCTGAATTTCATTTG
CCCAGTTCTGTGTAATTACAGTTGTGGTTTAGCTGACTGGGTTTGGACCA
GTGCAGTGAATGACGAACAATCTTCTGTACGACAGGTAGAGGGGAACAGA
GGTAGGCGTGGTAGTCATATGCTGTCCTTACAGGTAACAGCTTCTTTAGT
CCTAGCTTTGAATGTGCTGGATTTATTTTGTTAATAAAGGAGGTTGTTTG
TATCCAGACCACTTTAATGGCTGGCAATATTTTTACTATTTTTTCCTGTC
TGCGGATGTTCTGCTTATGGGTTTCATTGACTATACAATCGATAATATGC
ATCATTACTCAGTACGTATACCGCTGTACCATAAGATATTTCCTGCGAGG
GCTTATCCATCACATACGTTCGGTACAGGATGCTACATCCTATCATTTCG
CTGCAGCTGAACCCTCATCCGTGCTCTGCCCCTGGTATCTCGATAAACCT
CTACATTCACCACGCATCCCATGAAATAAATGCAACCTGCTCCTGCCTTT
TAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_c13.g1 MSMg01no113_c13.g1 CHROMAT_FILE:
MSMg01no113_c13.g1 PHD_FILE: MSMg01no113_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:31 2005
         (193 letters)



>mm_chr8_83786709_83787301
          Length = 593

 Score =  373 bits (193), Expect = e-108
 Identities = 193/193 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaaaatgctagtttcaagatatggcagccattaaccagacatgtagtttaatgctact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcaaaatgctagtttcaagatatggcagccattaaccagacatgtagtttaatgctact 260

                                                                       
Query: 61  tttggagtatattttctgttaatgatgttcaattcctgaatttcatttgcccagttctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttggagtatattttctgttaatgatgttcaattcctgaatttcatttgcccagttctgt 320

                                                                       
Query: 121 gtaattacagttgtggtttagctgactgggtttggaccagtgcagtgaatgacgaacaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaattacagttgtggtttagctgactgggtttggaccagtgcagtgaatgacgaacaat 380

                        
Query: 181 cttctgtacgaca 193
           |||||||||||||
Sbjct: 381 cttctgtacgaca 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)