BAC Information

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BAC

Clone NameMSMg01-113D21
Chromosome8 (Build37)
Map Location 82,309,116 - 82,309,695
singlet/doubletsinglet
Overlap genenone
Upstream geneLsm6, EG666340, EG666346, D630040G17Rik, 1700011L22Rik, Mmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10
Downstream geneLOC100039439, Hhip, LOC546075, Gypa, Frem3, Smarca5, Gab1, LOC666237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113D21.T7 (MSMg01no113_d21.b1)MSMg01-113D21.TJ (MSMg01no113_d21.g1)
ACCAG325439AG325440
length719710
length of high quality
(start - end)
370 (40 - 409)580 (68 - 647)
definitionCHROMAT_FILE: MSMg01no113_d21.b1 PHD_FILE: MSMg01no113_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:37 2005CHROMAT_FILE: MSMg01no113_d21.g1 PHD_FILE: MSMg01no113_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGGCTCCTCTTTCTGAGCTATCTCTTGTGCTGGGGTCCCCGTGTGTGGAT
GCAGCTGCATTTGAGTCATTCCTGTTTCTGTAACCTCTCACCCATATTCC
CATAAGTAACCCCAGTAAAACTTCTGGTTCACCAGGTTGGATTGTGTGGT
ACCCTTACTTTGTTCACATGGTTGGTTGGTTCCCTATCTGGGATGAATAT
GTTTGTTAATATATTCCAAATAATAGTATAATAGTATTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCT
CTCTCTCTCTCACACACACACACATAAATACATAATACATACATACATAC
ACACATACACACATACATACGTAGGTATGATATATCATGACAATAAACAA
AAAAACCAAACCCGACGCTGAACAGAAACCACGACTCGCTGAGAGGCACC
AAACCGCGGCTCTTAATAAAACAACCAGAGCCCACTTGAAAAGGTGACGA
AAAACAATTAATTACGAGCGAAAAAACCGCCTGTTTGCAGAAAGAAAAAT
GGGCGGTTTACACAAATGCCCCCAATGTGCCGCTTAACCGCCCCCATATG
CGAAAGTATCCCTTCCGTGAATCAAAAAAAGGCCTTCCTATGCACGCGGC
CTAACTCGCTGTCTTTTTT
ATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAACTGTGTTGACCAGACTAGCCTCGAACTTGCG
GATTTGCCTGCCTCTGCTTCTGAAGTGCTAGGACTACAGGAGTACCCCCA
TACCCTGCTAGTAAACTTACATTTTGAATGAACAGTACAATCTCTTTCCA
TGAGAGAGGTAAACACCCGTGTGCTTATTAATATCTGGATGGCATGTCAT
CTGCTTAGCAATGCTAACATGATTCTTCTATTAACAGCCGAGAATCAGCT
GGCTGAACAATACTTCAGCCTTCTGGACACTTCCCTTCTTGGTAAGTGAT
CAGTATTTTGACACTGCTGTAGAAACAACAGGAAATGATATGTTAGGAAT
CTGGATATCCTACTACAGATGAGTGCCAGGGGGCCGGGGAAGAACTAGTC
TACAAAACAGTCTGCAGAATTCATTCTGAGACCACAGGGAGAGAACAGCC
ATTTGCTCTCCACATTGGCAAAGTGAACACACAGTAGAAGGTTTTATGGT
GACTGTGAACCACTTCAGTGGAAAGCTAAGGCTATAATCACAGTAATTTT
GACTAAGATGGTAAATGCTTGAATAAGAATCATGTTAAATAGCTTTTCTG
TAAATAAAATTTTCCTCAGAAATTTTCACAAGTTTGCATACTTGGAAAAT
AGTGAATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_d21.g1 MSMg01no113_d21.g1 CHROMAT_FILE:
MSMg01no113_d21.g1 PHD_FILE: MSMg01no113_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:37 2005
         (580 letters)



>mm_chr8_82308824_82309803
          Length = 980

 Score = 1114 bits (576), Expect = 0.0
 Identities = 579/580 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgtgttgaccagactagcctcgaacttgcggatttgcctgcctctgcttctgaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 aactgtgttgaccagactagcctcgaacttgcggatttgcctgcctctgcttctgaagtg 813

                                                                       
Query: 61  ctaggactacaggagtacccccataccctgctagtaaacttacattttgaatgaacagta 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ctaggactacaggagtacctccataccctgctagtaaacttacattttgaatgaacagta 753

                                                                       
Query: 121 caatctctttccatgagagaggtaaacacccgtgtgcttattaatatctggatggcatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 caatctctttccatgagagaggtaaacacccgtgtgcttattaatatctggatggcatgt 693

                                                                       
Query: 181 catctgcttagcaatgctaacatgattcttctattaacagccgagaatcagctggctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 catctgcttagcaatgctaacatgattcttctattaacagccgagaatcagctggctgaa 633

                                                                       
Query: 241 caatacttcagccttctggacacttcccttcttggtaagtgatcagtattttgacactgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 caatacttcagccttctggacacttcccttcttggtaagtgatcagtattttgacactgc 573

                                                                       
Query: 301 tgtagaaacaacaggaaatgatatgttaggaatctggatatcctactacagatgagtgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgtagaaacaacaggaaatgatatgttaggaatctggatatcctactacagatgagtgcc 513

                                                                       
Query: 361 agggggccggggaagaactagtctacaaaacagtctgcagaattcattctgagaccacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 agggggccggggaagaactagtctacaaaacagtctgcagaattcattctgagaccacag 453

                                                                       
Query: 421 ggagagaacagccatttgctctccacattggcaaagtgaacacacagtagaaggttttat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggagagaacagccatttgctctccacattggcaaagtgaacacacagtagaaggttttat 393

                                                                       
Query: 481 ggtgactgtgaaccacttcagtggaaagctaaggctataatcacagtaattttgactaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ggtgactgtgaaccacttcagtggaaagctaaggctataatcacagtaattttgactaag 333

                                                   
Query: 541 atggtaaatgcttgaataagaatcatgttaaatagctttt 580
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 atggtaaatgcttgaataagaatcatgttaaatagctttt 293


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)