Query= MSMg01no117_a20.b1 MSMg01no117_a20.b1 CHROMAT_FILE:
MSMg01no117_a20.b1 PHD_FILE: MSMg01no117_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:29 2005
(600 letters)
>mm_chr8_117798411_117799406
Length = 996
Score = 1048 bits (542), Expect = 0.0
Identities = 583/600 (97%), Gaps = 8/600 (1%)
Strand = Plus / Plus
Query: 3 ggaattcagcagactcttcctctctggtga--tcagcagaaaacgatgccaattcttgat 60
|||||||| ||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct: 203 ggaattcaccagactcttgctctctgg-gaaatcagcagaaaacgatgccaattcttgat 261
Query: 61 tcctcttgaacttcacgcacatctctcccctctgtgcctgtatgaagacagcaagtagcc 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcctcttgaacttcacgcagatctctcccctctgtgcctgtatgaagacagcaagtagcc 321
Query: 121 tgcagcctgctaactgccacattcgtgattaagacacaccacacacgtcttcatgtatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgcagcctgctaactgccacattcgtgattaagacacaccacacacgtcttcatgtatag 381
Query: 181 gcgtagaggccagcctgcttcagagaacaccgtgtgcctgctcatcttgcctgcacctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcgtagaggccagcctgcttcagagaacaccgtgtgcctgctcatcttgcctgcacctct 441
Query: 241 tatctaggaaacttaagctttcaggatgagtgatatggagaacatgacatctgcttgtgt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 442 tatctaggaaacttaagctttcaggatgagtgatatggagaacatgacatctacttgtgt 501
Query: 301 cattagatggatgtcaatacttttgaccgaggggacaggttgcaacacaccagtctgaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cattagatggatgtcaatacttttgaccgaggggacaggttgcaacacaccagtctgaaa 561
Query: 361 atgaacagactcatagttatccagaaacacttcttgttactcaaatggtttccacatagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atgaacagactcatagttatccagaaacacttcttgttactcaaatggtttccacatagg 621
Query: 421 aggtctctgtggcctttttttttttttcaatgtccctactaggaagggtgcttgggtcct 480
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 622 aggtctctgtggccttttcttt-----caatgtccctactaggaagggtgcttgggtcct 676
Query: 481 gggtttgaaatagagctgattcgatctcccactttctacaagagaaaatcaaaaccaaaa 540
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 677 gggtttgaaatagagctggttagatctcccactttctacaagagaaaatcaaaaccaaac 736
Query: 541 gaattttacaaagcgaacacaggtctttgacctgctggcataaatctttggttcgaggaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 737 gaattttacaaagcgaacacaggtctttgacctgctggcataaatctttggttggaggaa 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 996
Length adjustment: 10
Effective length of query: 590
Effective length of database: 986
Effective search space: 581740
Effective search space used: 581740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_a20.g1 MSMg01no117_a20.g1 CHROMAT_FILE:
MSMg01no117_a20.g1 PHD_FILE: MSMg01no117_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:29 2005
(610 letters)
>mm_chr8_117937647_117938655
Length = 1009
Score = 1145 bits (592), Expect = 0.0
Identities = 608/618 (98%), Gaps = 9/618 (1%)
Strand = Plus / Minus
Query: 1 tgtttaactgaattatgcttcttccacataggaactcttccgagtgatttggaatacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 tgtttaactgaattatgcttcttccacataggaactcttccgagtgatttggaatacaga 873
Query: 61 gaaactgcaaactgatgtcttgttcctgcctgggtagatgcacccaccttcatta----- 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 gaaactgcaaactgatgtcttgttcctgcctgggtagatgcacccaccttcattatctat 813
Query: 116 ---tcacgggaggactctggggaatgagggatggagagatagccctgggcctcatgccac 172
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 aggtcacaggaggactctggggaatgagggatggagagatagccctgggcctcatgccac 753
Query: 173 catcctcacaatagaacaaggtcttccctgccagctgccggtcctcacatcagctgtgtc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 catcctcacaatagaacaaggtcttccctgccagctgccggtcctcacatcagctgtgtc 693
Query: 233 tacccaggccctgcctccccgggaagggactggtatgcagagttgaacccctctcaaggc 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tacccaggccctgcctccccgggaagggactggtatgcagagttgaacccctctcaaggc 633
Query: 293 cgagggcccgggagggcttcctctttgcctgctgtagaacagcagctgggccccagagca 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cgagggcccgggagggcttcctctttgcctgctgtagaacagcagctgggccccagagca 573
Query: 353 tggcaggtgtctaacagccctcggcaatcctgcaaaacaggaagtgagagagaacaccat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tggcaggtgtctaacagccctcggcaatcctgcaaaacaggaagtgagagagaacaccat 513
Query: 413 atccaattgaaactgcagtggactgtgggctgcaatgcttaattaaccacccttagtcat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 atccaattgaaactgcagtggactgtgggctgcaatgcttaattaaccacccttagtcat 453
Query: 473 tgcacagatctctgttgttgcaggagagggggggagggggccagagcacacggaggacaa 532
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 452 tgcacagatctctgttgttgcaggagagggggg-agggggccagagcacacggaggacaa 394
Query: 533 caaagccgtttctggaatgtgtttgtgcttcactccctggtcctgttcacttatcctgga 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 caaagccgtttctggaatgtgtttgtgcttcactccctggtcctgttcacttatcctgga 334
Query: 593 tcctgctgacaaaaatgc 610
||||||||||||||||||
Sbjct: 333 tcctgctgacaaaaatgc 316
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1009
Length adjustment: 10
Effective length of query: 600
Effective length of database: 999
Effective search space: 599400
Effective search space used: 599400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
