BAC Information

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BAC

Clone NameMSMg01-117G21
Chromosome8 (Build37)
Map Location 90,642,433 - 90,642,544
singlet/doubletsinglet
Overlap genenone
Upstream geneCbln1, LOC100040294, 4933402J07Rik, Zfp423, LOC100040328
Downstream gene5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985, Sall1, LOC100041089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117G21.T7 (MSMg01no117_g21.b1)MSMg01-117G21.TJ (MSMg01no117_g21.g1)
ACCAG328564AG328565
length718727
length of high quality
(start - end)
139 (121 - 259)113 (77 - 189)
definitionCHROMAT_FILE: MSMg01no117_g21.b1 PHD_FILE: MSMg01no117_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:59 2005CHROMAT_FILE: MSMg01no117_g21.g1 PHD_FILE: MSMg01no117_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCATATTTGCGGCGCTATACGACTCCTATATTCAGAAATCCGCGGAATC
CTCACCCTTCCCTGATATTGGTCCCCGCCCCCTCTCCCCCAATTTAGCCT
CAAAAACCACACAGCAGCTCTGGCCCTGTCTACTTCAAATAACTGGGATC
CAGTTGTTCTGGTGGGGAGCCCTTCCTCCTTACCCCAAACCTGAAATGTG
AGTTCAAAGCCAGCCTGGTCTACATGGTGAGTTCTGGGACAGGCAGAGCT
ACAAAACAACAAAAGGTGGAGTGCTTTTTTTTGCTTTGTTTTGTTTTGTT
TTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGCTGTCCTG
AAACTCTTTCTGTACACCACCCCGGCCTCGAACTCAGAAATTCGCCTGCC
TCTACCTCCCGAGTGCTGGAATTAAAGGCGTGCACCACCACCGTCTCCCG
AGTGCTGGGATTGACACTCCACCTGGTTTAAAAGGTGGAGAGTTAATAGG
CATATGTTATAATATGATCATAAAATTGGCCTTCTCCCTCTCCAGTGTTT
GCCCAAAACAAGGCTCCTTTCCTTAAAATTGCAAAATGACCAATCCTTAG
TGGACTGTTGTCACCGTATGACTCTGCAGCACTTGTTTACTTATGGATAT
ATAACCCTACTACTCCATGTGGTAGCTACCTCATCTTGTGTTATGTCTTT
TTTACTATGTACAATGTC
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTTCCTCCCCGAGGCAGGAGGCGG
CGCCATGGCTATATCAGCCTAGCTGCTCGCTATTCTCGGCCCTTCCAGCT
GAACATCTAGCGCTGGGTTCCCGAAGGCGTTTGCTGAACTTAGCCTATAG
AAAACTAGTTTAGTTGAGGGGTCTGGATGAGCTACCCAATAAACTCAACG
TTTCTAGAAAATGGGCGGTGCCAAAGGGAGGGGCTGAAGGGAGCGGTTAG
AGGTGGGAGTTGGCGCTGTCGTCTTTTCGGGCAGGCCGGTCTGCTATGAT
GACCGGTCCGTGTCGTTGACCGGATCTGCCGCCCGACTTGAACTCGCTAG
TACCTTGCGCAAGGTATAGTGTGTCTTCCGCCGGGTCCCGTCCCGAGCCT
GATGAGGTCGCGAGGTCTCTGTGACGTGGATCCCGCGCGCTCGTCCGCCA
AAGTTCTGCCCCTTCTCCCCCCGTATGGCTTCGCAGGCCCCCGTCCCAGC
GACTAGCCCCCTGCGAGTTTACGACCGCTAATTCCTTATTCCGTCCGAAC
ACCTTATCATCTCTTAACTCTAGCTTCCTCCCTTGCCTTCCGCCCATATC
CGTCAACTCTCACCTCCTCCTTGCCCCCCCTCCAGAACGCCTAACCATCG
TATTCTCTAACACACCCCCCCCTGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_g21.g1 MSMg01no117_g21.g1 CHROMAT_FILE:
MSMg01no117_g21.g1 PHD_FILE: MSMg01no117_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:59 2005
         (113 letters)



>mm_chr8_90642233_90642745
          Length = 513

 Score =  209 bits (108), Expect = 4e-59
 Identities = 111/112 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttcctccccgaggcaggaggcggcgccatggctatatcagcctagctgctcgctattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttcctccccgaggcaggaggcggcgccatggctatatcagcctagctgctcgctattct 260

                                                               
Query: 61  cggcccttccagctgaacatctagcgctgggttcccgaaggcgtttgctgaa 112
           |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggcccttccagttgaacatctagcgctgggttcccgaaggcgtttgctgaa 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 513
Length adjustment: 8
Effective length of query: 105
Effective length of database: 505
Effective search space:    53025
Effective search space used:    53025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)