BAC Information

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BAC

Clone NameMSMg01-117N11
Chromosome8 (Build37)
Map Location 72,135,975 - 72,229,724
singlet/doubletdoublet
Overlap geneAI449175, EG636741, 1200003I07Rik
Upstream gene4732435N03Rik, Ints10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968
Downstream geneD330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117N11.T7 (MSMg01no117_n11.b1)MSMg01-117N11.TJ (MSMg01no117_n11.g1)
ACCAG328867AG328868
length713714
length of high quality
(start - end)		556 (74 - 629)584 (75 - 658)
definitionCHROMAT_FILE: MSMg01no117_n11.b1 PHD_FILE: MSMg01no117_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:31 2005CHROMAT_FILE: MSMg01no117_n11.g1 PHD_FILE: MSMg01no117_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,229,169 - 72,229,724)(72,135,975 - 72,136,558)
sequence
NCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCACTGTATAAATTTCCAAATGGAAACAGCTGTGAAGCCTTCAT
GGTCACAGTTGTTTAAGATGCTCATAGTGTTGGAAGGTGGGCAGTTCTGT
GAGTGTAAGGAGCGTGGGAATTTAATGGTTACTAGGAGATGGACATTTCC
TTTGCAGTGGCTTCCCATGACTTGCCTGTACTCTTGTAAATACCCCAAAT
TAAACTCCACGGTTCCTCAAGCCCACTTGGGTAGAATCATTCTTGGTCCC
TGTCATTGATGCACGGTCTGGTTAGAACAGACCTTCGTAAATGTCTTCAG
GGTTTTAAAGTTGTGTTTACATCCGTCTGAAACATCCAGCAGGGGTGAAG
GCTGTGCCCTAATGTGCTGTGCTTCTTTCTGTTTTGGATGGGTGCTTCAG
CTGTCAACTTGACACAATCTGGTGTCACCTGGGAAAGGAGTCTCACTAGT
GACCTGTCTGAGTTAGGTTCGCCTTCACACAGCTGTGAGGGATTTTCTTA
CTAGGATGATTTGAGGTAGGAAGACCCATCCTGAATGCTGTCAGTGCTGT
TTTATGGACTGAATTAAAAAGGACAGAAGTAGCTGAGCGCAAAGATTCCT
TGCTGTCTGCCTTGGGATTTATGCGGTGTCAAGCTCCTGCCACCGAGACT
GGCCCATAGTAAG

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCATGTGATTGAAGGGCGTTGAGA
CATCTGAAGGCCTTAGTACACTGTTGACATTTATACGGTCTTTCTTCAAT
ATGAATTTTCTGATGTCTTTGAAGAGAATTGTAAGAACTCAGAGTTTTAC
CACACTGGTTACATTCATAACTTTTTCGTACAGGTTGGCTTCCTACACAC
TCTTTGTACTCATAGTTGTGATGGCCATTGTAAGTTAGGTGGTATAGTCC
ATAGGATTTTAAACATACCTCACACTCAGAAGGCCCATTCACAGTGTGAG
TTTCCATGTAGCCTTCAACACTTGTGAGAAAATTAGAATCAGGTGGCTTC
TCTTCATATTCCTCGTGTTCATACTGTGTGTATTCAGAGTGAGTGACGAT
GTTCCTATTAAAAGATGAATGACACATGAAAATGTCTCCACACTGCTGCT
CATATTGAGACTGGTATATGGATAAGGCTGTTCCACCACCTTCTTCAGTA
TCATACAGCGTCTACCAATATAACTACTATGAAAAATAACAAGCATATTA
GCGACAGCTGTTTTCCTACTGTTTGCTTGTTATACCATCTTGGACAACCT
GCTACCCAAAACAAGCAAAATGTGTGCCTTCACATGAAAAGTCTGAAACT
AAATGAACTGATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_n11.b1 MSMg01no117_n11.b1 CHROMAT_FILE:
MSMg01no117_n11.b1 PHD_FILE: MSMg01no117_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:31 2005
         (556 letters)



>mm_chr8_72229162_72230117
          Length = 956

 Score = 1060 bits (548), Expect = 0.0
 Identities = 554/556 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatggaaacagctgtgaagccttcatggtcacagttgtttaagatgctcatagtgttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaatggaaacagctgtgaagccttcatggtcacagttgtttaagatgctcatagtgttgg 504

                                                                       
Query: 61  aaggtgggcagttctgtgagtgtaaggagcgtgggaatttaatggttactaggagatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaggtgggcagttctgtgagtgtaaggagcgtgggaatttaatggttactaggagatgga 444

                                                                       
Query: 121 catttcctttgcagtggcttcccatgacttgcctgtactcttgtaaataccccaaattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 catttcctttgcagtggcttcccatgacttgcctgtactcttgtaaataccccaaattaa 384

                                                                       
Query: 181 actccacggttcctcaagcccacttgggtagaatcattcttggtccctgtcattgatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 actccacggttcctcaagcccacttgggtagaatcattcttggtccctgtcattgatgca 324

                                                                       
Query: 241 cggtctggttagaacagaccttcgtaaatgtcttcagggttttaaagttgtgtttacatc 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cggtctggggagaacagaccttcgtaaatgtcttcagggttttaaagttgtgtttacatc 264

                                                                       
Query: 301 cgtctgaaacatccagcaggggtgaaggctgtgccctaatgtgctgtgcttctttctgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cgtctgaaacatccagcaggggtgaaggctgtgccctaatgtgctgtgcttctttctgtt 204

                                                                       
Query: 361 ttggatgggtgcttcagctgtcaacttgacacaatctggtgtcacctgggaaaggagtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttggatgggtgcttcagctgtcaacttgacacaatctggtgtcacctgggaaaggagtct 144

                                                                       
Query: 421 cactagtgacctgtctgagttaggttcgccttcacacagctgtgagggattttcttacta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 cactagtgacctgtctgagttaggttcgccttcacacagctgtgagggattttcttacta 84

                                                                       
Query: 481 ggatgatttgaggtaggaagacccatcctgaatgctgtcagtgctgttttatggactgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  ggatgatttgaggtaggaagacccatcctgaatgctgtcagtgctgttttatggactgaa 24

                           
Query: 541 ttaaaaaggacagaag 556
           ||||||||||||||||
Sbjct: 23  ttaaaaaggacagaag 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no117_n11.g1 MSMg01no117_n11.g1 CHROMAT_FILE:
MSMg01no117_n11.g1 PHD_FILE: MSMg01no117_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:31 2005
         (584 letters)



>mm_chr8_72135775_72136758
          Length = 984

 Score = 1114 bits (576), Expect = 0.0
 Identities = 582/584 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcatgtgattgaagggcgttgagacatctgaaggccttagtacactgttgacatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcatgtgattgaagggcgttgagacatctgaaggccttagtacactgttgacatttat 260

                                                                       
Query: 61  acggtctttcttcaatatgaattttctgatgtctttgaagagaattgtaagaactcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acggtctttcttcaatatgaattttctgatgtctttgaagagaattgtaagaactcagag 320

                                                                       
Query: 121 ttttaccacactggttacattcataactttttcgtacaggttggcttcctacacactctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttaccacactggttacattcataactttttcgtacaggttggcttcctacacactctt 380

                                                                       
Query: 181 tgtactcatagttgtgatggccattgtaagttaggtggtatagtccataggattttaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtactcatagttgtgatggccattgtaagttaggtggtatagtccataggattttaaac 440

                                                                       
Query: 241 atacctcacactcagaaggcccattcacagtgtgagtttccatgtagccttcaacacttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacctcacactcagaaggcccattcacagtgtgagtttccatgtagccttcaacacttg 500

                                                                       
Query: 301 tgagaaaattagaatcaggtggcttctcttcatattcctcgtgttcatactgtgtgtatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagaaaattagaatcaggtggcttctcttcatattcctcgtgttcatactgtgtgtatt 560

                                                                       
Query: 361 cagagtgagtgacgatgttcctattaaaagatgaatgacacatgaaaatgtctccacact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagagtgagtgacgatgttcctattaaaagatgaatgacacatgaaaatgtctccacact 620

                                                                       
Query: 421 gctgctcatattgagactggtatatggataaggctgttccaccaccttcttcagtatcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctgctcatattgagactggtatatggataaggctgttccaccaccttcttcagtatcat 680

                                                                       
Query: 481 acagcgtctaccaatataactactatgaaaaataacaagcatattagcgacagctgtttt 540
           ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 acagcgtctacaaatataactactatgaaaaataacaagcatattagtgacagctgtttt 740

                                                       
Query: 541 cctactgtttgcttgttataccatcttggacaacctgctaccca 584
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctactgtttgcttgttataccatcttggacaacctgctaccca 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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