BAC Information

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BAC

Clone NameMSMg01-121D10
Chromosome8 (Build37)
Map Location 15,569,946 - 15,570,241
singlet/doubletsinglet
Overlap genenone
Upstream geneDlgap2, C030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097
Downstream geneEG665619, LOC634008, Csmd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121D10.T7 (MSMg01no121_d10.b1)MSMg01-121D10.TJ (MSMg01no121_d10.g1)
ACCAG331383AG331384
length707714
length of high quality
(start - end)
294 (67 - 360)290 (72 - 361)
definitionCHROMAT_FILE: MSMg01no121_d10.b1 PHD_FILE: MSMg01no121_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:55 2005CHROMAT_FILE: MSMg01no121_d10.g1 PHD_FILE: MSMg01no121_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAACTCXXXXXXXXXXXXXXXXXXXXXXXXXCTATCAAAAGAGATCCGC
GGAATTAATGTGTCTTTAAAAAAGGATGTGAAGTTGGGGAGTTAAAAATG
GTGAGACAGCTGAAAGGGGAGACAAATAGAGCTGCACTTGACCCTAACCT
CTTCCATTCGTCTATGGAATTTTCAAGCAACACATACAATGATAAGTCAA
ATAAGAATGCATTTGGAATAAAATATACCCTGAGCCTGTCCGTACTGACA
AGGATGTAGACTAGAATCATGCAAAGGATCATCTGAGTTAGGCAGGGATT
TCTGTAGGAAGAGGGAAGGGTCTGCTGTTGTCTGGAAATTGCCTAAAGTG
GCAGGAGTGTGGTAAGGCGCCCTCCTGTGAGTCAGCGGGCCACTCTCCAT
CCTGACAGGAGTGTTGCGAGCTGGACTGAGCTGTAGCTGGTTTGCAGTCA
GCTGTGGGCACTGCGTGGTTGGCTGGCAATCCTTGTACTGTATGCGTGAT
TGCTTTGCCTATTTAGTGAGGCCATATTTATTCTATGTGAGAAATTTTCT
ACTTTTGTCCTACCATTTCTTCCAAAAGTTTAGTATTTTTGACGACATAA
CAAACAACGCTATCCTTTTTATAATGCAAACTCAAAAGTTCCTTCTCAAG
ATTGCTTAAAAACCTGCCTTGCCTGGTTTGGAACAGCCATCCCCTGACTC
CCTCCCG
ATGATCGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTTCCCTACTTTTTAA
TAGGGTTATTTGGTTCTCTGGAGTCTAACTTCTTGAGTTCTTTGTATATA
TTGGATATCAACCCTCTATCAGATGTAGGATTGGCAAAGATCTTTCCCCA
ATGTTTTAGTTGCTGTTTTGTCCTATTGACAGTGTCCTTTGCCTAACAGA
AGATTTGCAATTTTATGAGGTCCCATTTGTCCATTCTTGATCTTAGGGCA
TAAGCCATTGGTGTTCTGTTCAGAAATTTTTCCCCTGTGCCCATGTGTTT
GAGGCTTTTTTTTTTTTCTTTCCCCCCTGCTAGTTTCAGTGTATCTGGTT
TTATGTGGAGATCTTTGATCCACTTGAACTTGAGCTTTGTCTAGGAAGAT
AAGAATGGATCAGTTTGCCTTCTTCTATGTGTTAACCACCACCTGAACCA
GCAACATTTGCTGAAAATGCTGTCTTTTTTCCCTTGCACGGTTTTAGCTT
CTCTGTCCTAGACCCACAGATTATAGGCGTGTGTGCCCCTCTTCGGCTCC
TCCATCCTATTCCATTGATTCTACCTGCCCTGTCATTGCACCACTCCCAT
GCCGCGCTCATCTCTATTGCTCCTGCAGCAATACCATGTCCCGGACCATG
ACTCTCCCAGATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_d10.b1 MSMg01no121_d10.b1 CHROMAT_FILE:
MSMg01no121_d10.b1 PHD_FILE: MSMg01no121_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:55 2005
         (294 letters)



>mm_chr8_15569746_15570441
          Length = 696

 Score =  553 bits (286), Expect = e-162
 Identities = 293/296 (98%), Gaps = 2/296 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaaaaggatgtgaagttggggagttaaaaatggtgagac--agctgaaaggggagaca 58
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 201 taaaaaaggatgtgaagttggggagttaaaaatggtgagacagagctgaaaggggagaca 260

                                                                       
Query: 59  aatagagctgcacttgaccctaacctcttccattcgtctatggaattttcaagcaacaca 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatagagctgcacttgaccctaacctcttccattcgtctatggaattttcaagcaacaca 320

                                                                       
Query: 119 tacaatgataagtcaaataagaatgcatttggaataaaatataccctgagcctgtccgta 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaatgataagtcaaataagaatgcatttggaataaaatataccctgagcctgtccgta 380

                                                                       
Query: 179 ctgacaaggatgtagactagaatcatgcaaaggatcatctgagttaggcagggatttctg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgacaaggatgtagactagaatcatgcaaaggatcatctgagttaggcagggatttctg 440

                                                                   
Query: 239 taggaagagggaagggtctgctgttgtctggaaattgcctaaagtggcaggagtgt 294
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggaagagggaagggcctgctgttgtctggaaattgcctaaagtggcaggagtgt 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 696
Length adjustment: 9
Effective length of query: 285
Effective length of database: 687
Effective search space:   195795
Effective search space used:   195795
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)