BAC Information

Click to search

BAC

Clone NameMSMg01-122C03
Chromosome8 (Build37)
Map Location 125,776,034 - 125,776,749
singlet/doubletsinglet
Overlap gene1300018I17Rik
Upstream geneGm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L
Downstream geneZfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122C03.T7 (MSMg01no122_c03.b1)MSMg01-122C03.TJ (MSMg01no122_c03.g1)
ACCAG332072AG332073
length9631,013
length of high quality
(start - end)		723 (82 - 804)715 (125 - 839)
definitionCHROMAT_FILE: MSMg01no122_c03.b1 PHD_FILE: MSMg01no122_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:16 2005CHROMAT_FILE: MSMg01no122_c03.g1 PHD_FILE: MSMg01no122_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTTTTNNTTACAATGCGCGCTATAGACTCCTATAGGGAGAGGATCCG
CGGAATTCAGTGTGAGCCCCCACTTTAGGCTAACTTCCAGTGAATTCTCT
GTTTTTGTTTCCGTTTTTTTTTTGTTTTGTTTTAAACTTTGTATGTATGG
GTGATTTGCCTGTATGTATGTAGATGGTTGTGAGCTTCTATATGAATGCT
GGGAATTAACCCAGGTCTTCTGGAAGAGCAGCCTGTCTCTTCAACCCCAA
TTGTCCAAGCTTTTAAACATTTTCTTTAGTAATATTTATTACACATGTAT
GAGTCTCTTGCCTGCATGTATGGCTGTGCACCATGTGCATGCAGTGCCCA
CAGAGGCCAGAAGAGGGTGCTGGGTCTCCTGGAACTGGATCTACAGAGGG
TTGGGAGCTACCATGTGGGTGCTGAGAATCAAACCCTGGTTCTCTGTAAG
AGCAAGCAGTGCTCTTAACCACTGCGCCCTCTCTCTGGTTCTCTTGTCTC
TGTCTGTACTCCCGGCCTAGAACTCAGGGATCAGCTTGCCTCTGCTTCCC
TAGTGCTGGCATTAGGTGCACACCACCACATCCGGCTGGGATTAGGTGTG
TACTACCACATCTGGCTGGGATTAGGTGCACACCACCACATCTGGCTGGG
ATTAGGTGTGTACTACCACATCTGGCTGGGTATTGTACTTTTTTTTTTTT
TAAGATGTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGAC
ACACCAGAAGAGGGAGTCAGATCTCATTACAGATGGTTGTGAGCCACCAT
GTGTGCTGCTGGGAATTGAACTCATGACTTTCCTTCTTGATGCCTTCCAG
CAAATATTACATTACCTGCTTGAATCCTCCACGGAACGGTTGTGGTTGAA
CCGGAATATGTTTCGGTAAAACTTCTAAAAAAAGGCCCATTTTGGTGGCG
GTTGCCCCCCCCC

CTGTCTTCTTTNTAACAGTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTGATTTTTTGTTCTGTTT
GATTTCTTTTTCCCTCCTTGACTAGACAGTATAGATACCCGTCTGTGTCC
TAGCTGGACCATCCATCACTGAAGCCTAGAAGGAAGTCTTGTCAAAAAAC
AAGCAGGCACTGTTGGTCCTGCAGTTGTATCTGGGCATTCACCAGGCAGG
CAGGATGCAGGCCTGACCACTGCTATTCTCTCCCCTGCATCTAGGAAGCG
TACGTGGAATACCTGCGCAGCATCCACTACATCTCCCAGGTATTGCTCGA
AGACGTGGAAAACACTACAGGTATGCCTTCAGACTTGCTACTCCTCTCAT
GATAGCAAAATGGTGCCCCCCCACCCACCCATGCCCTTGCCCACCAGCCG
GCACCGCCAAATGTTTTCAGATGAGGGCGGGGAGCTGTCTCCTTTTCTGC
CTTCTGAGGTTTTCCAGAGGTCTCCTGTCTCTTTCCAACCTGGTCCTTAT
CGTTAGCATATGATGTCATAGTGTGACATGCTGGCATTGAGGAGAAGTGG
TCAGGATTAGGGGACGGATTGTGAATTGGGTCAAGACACTGCCTCAAGGT
AGTTAAGAGTGAGATGCACAAAGTGGGGGCCTTGCCAGCAAAAGTACGTT
TAAAAGGTCCTGGAGGAGGAAGTAGTTAAATTAGTGTTTTGTACATCTTG
GACGGATGTGGAAGGGAATTCTGGGAACCTCCCAGAGCTCTACCCAGCAT
GGGGAGGAGCATAGAGCTTGGGTGTATTCTGAAAGAGAAGCCCACCAGAC
TTGCTGGGGTGTGTGGTGAGCTGCTAACCACAGGGGGTGTTCCCAGCAGA
TGAGGGGCGACATCACATAAGGGGAGAAATGGTGAAATCCCGGTGTGCTG
CTACAGAATGCACTTCATTTTGAAAACAGCTTCTTGTCTTAACATGCCAG
GAAAGCCCCTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_c03.g1 MSMg01no122_c03.g1 CHROMAT_FILE:
MSMg01no122_c03.g1 PHD_FILE: MSMg01no122_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:16 2005
         (715 letters)



>mm_chr8_125775834_125776949
          Length = 1116

 Score = 1336 bits (691), Expect = 0.0
 Identities = 710/717 (99%), Gaps = 3/717 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacagtatagatacccgtctgtgtcctagctggaccatccatcactgaagcctagaagga 60
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 gacagtatagata-ccatctgtgtcctagctggaccatccatcactgaagcctagaagga 858

                                                                       
Query: 61  agtcttgtcaaaaaacaagcaggcactgttggtcctgcagttgtatctgggcattcacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 agtcttgtcaaaaaacaagcaggcactgttggtcctgcagttgtatctgggcattcacca 798

                                                                       
Query: 121 ggcaggcaggatgcaggcctgaccactgctattctctcccctgcatctaggaagcgtacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ggcaggcaggatgcaggcctgaccactgctattctctcccctgcatctaggaagcgtacg 738

                                                                       
Query: 181 tggaatacctgcgcagcatccactacatctcccaggtattgctcgaagacgtggaaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tggaatacctgcgcagcatccactacatctcccaggtattgctcgaagacgtggaaaaca 678

                                                                       
Query: 241 ctacaggtatgccttcagacttgctactcctctcatgatagcaaaatggtgcccc--ccc 298
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 677 ctacaggtatgccttcagacttgctactcctctcatgatagcaaaatggtgcccccaccc 618

                                                                       
Query: 299 acccacccatgcccttgcccaccagccggcaccgccaaatgttttcagatgagggcgggg 358
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 617 acccacccatgcccttgcccaccagctggcaccgccaaatgttttcagatgagggcgggg 558

                                                                       
Query: 359 agctgtctccttttctgccttctgaggttttccagaggtctcctgtctctttccaacctg 418
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aactgtctccttttctgccttctgaggttttccagaggtctcctgtctctttccaacctg 498

                                                                       
Query: 419 gtccttatcgttagcatatgatgtcatagtgtgacatgctggcattgaggagaagtggtc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtccttatcgttagcatatgatgtcatagtgtgacatgctggcattgaggagaagtggtc 438

                                                                       
Query: 479 aggattaggggacggattgtgaattgggtcaagacactgcctcaaggtagttaagagtga 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aggattaggggacggattgtgaattgggtcaagacactgcctcaaggtagttaagagtga 378

                                                                       
Query: 539 gatgcacaaagtgggggccttgccagcaaaagtacgtttaaaaggtcctggaggaggaag 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gatgcacaaagtgggggccttgccagcaaaagtacgtttaaaaggtcctggaggaggaag 318

                                                                       
Query: 599 tagttaaattagtgttttgtacatcttggacggatgtggaagggaattctgggaacctcc 658
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 317 tagttaaattagtgttttgtacatcttggacggatgtggaagagaattctgggaacctcc 258

                                                                    
Query: 659 cagagctctacccagcatggggaggagcatagagcttgggtgtattctgaaagagaa 715
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cagagctctacccagcatggggaggagcatagagcttgggtgtattctgaaagagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1116
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1106
Effective search space:   779730
Effective search space used:   779730
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |