BAC Information

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BAC

Clone NameMSMg01-123B02
Chromosome8 (Build37)
Map Location 78,642,482 - 78,643,064
singlet/doubletsinglet
Overlap genenone
Upstream geneMcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik, LOC666036
Downstream geneLOC100039185, EG631594, LOC666226, LOC100039211, LOC384847, Nr3c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123B02.T7 (MSMg01no123_b02.b1)MSMg01-123B02.TJ (MSMg01no123_b02.g1)
ACCAG332769AG332770
length1,5031,268
length of high quality
(start - end)
---586 (124 - 709)
definitionCHROMAT_FILE: MSMg01no123_b02.b1 PHD_FILE: MSMg01no123_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:16 2005CHROMAT_FILE: MSMg01no123_b02.g1 PHD_FILE: MSMg01no123_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAAAACACCNCNGAAAAATTTCGGCGCTAXXXXXXXXXXXXXXXXXXX
XXXXCGCGCAATTCCAGGCCCATACCTAAACCTATTAAAAGCCATATACC
GCAAACCCAGTAGCCACCTAAAATTATATGGAGCAGCAGCTGGAAGCCAT
CCCACTAAAATTAGGGACCTAGACAAGCCGCCCACTTTCTCCCTACCCAA
TCCATAGTACTTGAAGTCCCAGCCAGGGCAATTCCACATCACAAGGAGAT
CCAAGTGATACAAATTGGAAAGGAAGAAGTCCAAATATCCCTATTTCGCC
ATGATATGATAGTATATATAAGTGACCCTAACAATTACCCCCGAGCAACT
CCAACCCCTACTAAACAGCCTTCCGTGCAGCACGCTATATCATAAACACT
CAACTCCAGCCCCACTAATGCGCCTTTCTTTACTCCCAAGCGACAACCCG
GCCACAGACAACGAACTCAGGGCAAANAACCCCTCTTTTTTTTTTACCCC
CCCAATACCCCTCCCCCCCCCCCCCCCCCCAAAAAAAAAGAGGGAGGGAA
GCCTAAAGCATCCATCATGCACACCACACTCCCCAGCCCCCCGCCACCAC
ACATACTCTGCACGACACCATCCCCCCAACCATGCCAACCGAACTGGCCC
CTCCCCTCCCTCCCGGCACTACCCACTCCCTCCCCCACCGCCCGCCCCCC
GCCTCCCCCGCCCCCCCCCCCCGCCCCCCCCCGCCCCCCCCCCCCCCCCC
ACAATCCCCCTACCTCCCCTCCCTCTCCCCCCCCCCTCACCAACACCCCC
AACCCCTGCCCATCCCCCCCCCTCCCCCTCCCCCCCACCACCCACCCCCC
CTCCCCCCCACCCTCCATCCCCTCCCCACCCCTCCCTCCCCCCTCCCCCC
TCGCCCCCTACTCCTCCCCCCCGCCCCTGCCCTCTTCCCCCCCCCCCTCC
CCCCCCCACCTCCCCCCCTCCCCCCTCCCTCCCCTCCCCTCCCCCCCCCT
CCTCACCCCCCCCCCTCCTCCCCCGCCCCTCCCTCCCCACCCCCCTCTCC
TCTACTCCTCCTCCCCTCCCCCTCCCTCCCCCCTTTCTTCCCTCCCCCTC
TCTCCGCCCCTCCCATCGCCCCCTCTCTCTCCCCCTCCCCACCCCCCCCT
CCCCCTCCCTCCCCTCCCCGCCTACCCCCCCCTCTCCTCTCCTCCCTCCT
CCTCCCCCCCCTCTCCACTTCCCCCTCTCACCCTCTCCCCTCCCCCACCC
CTCTCTCCTTCTACTCCTCTCCCCCCCCCCACCCCCCTCTATCTCCTCTC
CCTCCTCCTCTCTCTCTCTCTCCCCCCTCGCACTCCTCCCCCCCTCTCCT
CATTCCAACCCTACCCCCTCCCTCCCCTCGCTCTCTCCCTCCCCCTCCCT
TCTCGACTACCCCTCTCGCTACCCTCTCCCTCACCCTCCTCCCTTTCCTC
CCCACTCNCCCNGTCCTCTTACTCCTCCTCCTTTACCCTCTCTCTCCCTC
ACG
TTTTTTTTGAAGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCTAAAGTCCTCGTTGATCTACCTGGATAACA
ATACTATTACTTTTTGGACCGGGCGCATCTTATATTGATTTTTCATATTG
CTCCTGTTTTATAATAGGACCTAGACATCTGAAGCTATATTTTGGATTGT
GTTTTTTAATGAGTTTTCTGCCCACCAGGCAAGATTTCTAAAATAGGATA
ATGGCATAGCTTGTGAGAGTGCCAAGGGAAAAACCTATGTGGAACCAGTC
CTCTTATATGCGTGGCCTATTGGGGCACCTGAGCATTTGGAGGATGTTAT
AGTTCTAAGTGTGTGGAACCATGTGAGGGGCTCCCCTTAGCAGTGTTTGT
GCTTGGTGAAGAGGTTCAAAGGGTAGATTTAGCTGCATTTTTAATTATGT
AGAATTTTAAACATTTTTCATATATTTATTGACCCTCGTGTATCTTCTTT
GAAATAAATCCATACTCATATAACTTACCAATTACTTAGAAGAGAATTAT
TTATTATTTGCTTGTTGAGCTGTAAGAGTTCTTGAGATATGCTAGGTGCT
TGATCATTATCAGTTGAATGCTTTACAAGGCTCTATCATATCCTATAGGC
TATAGTTCACTTTTATAATAATGCCCTTTGATGCACTAGAGTTTTTAATC
GTGAAATACATTCTCCTATATTTACTTTTGTCTATGCCCTTGATGTTATG
CTTACTAAATTGTTTAAGATTAATTTACCAGTCCTCCTTCCTTCTTACAA
GTTACACTTTTAGTTCTTATTATTTAAGTATTTTGAATCCATTTTTGAAT
TGACTCTCCCTTTTTTTAAAAGTTGCCTTATTTTTTGCCTGGGATTAACT
TTTGGTTGTTGGTTTTCAATTCTCTCTTTTAATGTAAAATCAATTGTGAA
CTTTAAATGAATTCCCAAACTCCCCCCCAAATTAAAATTTTTCTTTTTTA
GTAATAGGGGGGAATTCCAATGGCCCAAAAATCGAACCAAATCTCATTCT
TCTATTGGATTCTTTTCTCCCGCCCAAATAAGACTTTTCTAAAGGCCTTT
CTTTGCGTAAATTAACACAACATTTACACAGTGCTGTGGAATATCCTCAG
AATTTAACCCCTCCTCTGGACACCCCTATAAATATTCTTATCCCCCCCTC
TCTTATAAAAAATATATCCCTCCACAACNACCTCTTCTATACTTCTTTCC
CCGCGGCGCCGTCTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_b02.g1 MSMg01no123_b02.g1 CHROMAT_FILE:
MSMg01no123_b02.g1 PHD_FILE: MSMg01no123_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:16 2005
         (586 letters)



>mm_chr8_78642281_78643266
          Length = 986

 Score = 1098 bits (568), Expect = 0.0
 Identities = 580/584 (99%), Gaps = 1/584 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gcatcttatattgatttttcatattgctcctgttttataataggacctagacatctgaag 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gcatcttatattgatttttcatattgctcctgttttataataggacctagacatctgaag 261

                                                                       
Query: 62  ctatattttggattgtgttttttaatgagttttctgcccaccaggcaagatttctaaaat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctatattttggattgtgttttttaatgagttttctgcccaccaggcaagatttctaaaat 321

                                                                       
Query: 122 aggataatggcatagcttgtgagagtgccaagggaaaaacctatgtggaaccagtcctct 181
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 322 aggataatggcatagcttgtgagagtgccaagggcaaaacctatgtggaaccagtcctct 381

                                                                       
Query: 182 tatatgcgtggcctattggggcacctgagcatttggaggatgttatagttctaagtgtgt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tatatgcgtggcctattggggcacctgagcatttggaggatgttatagttctaagtgtgt 441

                                                                       
Query: 242 ggaaccatgtgaggggctccccttagcagtgtttgtgcttggtgaagaggttcaaagggt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggaaccatgtgaggggctccccttagcagtgtttgtgcttggtgaagaggttcaaagggt 501

                                                                       
Query: 302 agatttagctgcatttttaattatgtagaattttaaacatttttcatatatttattgacc 361
           |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 502 agatttagctgcatttttaattatgtagaaatttaaacatttt-catatatttattgacc 560

                                                                       
Query: 362 ctcgtgtatcttctttgaaataaatccatactcatataacttaccaattacttagaagag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcgtgtatcttctttgaaataaatccatactcatataacttaccaattacttagaagag 620

                                                                       
Query: 422 aattatttattatttgcttgttgagctgtaagagttcttgagatatgctaggtgcttgat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aattatttattatttgcttgttgagctgtaagagttcttgagatatgctaggtgcttgat 680

                                                                       
Query: 482 cattatcagttgaatgctttacaaggctctatcatatcctataggctatagttcactttt 541
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cattatcagttgaatggtttacaaggctctatcatatcctataggctatagttcactttt 740

                                                       
Query: 542 ataataatgccctttgatgcactagagtttttaatcgtgaaata 585
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ataataatgccctttgatgcactagagtttttaatcgtgaaata 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)