Query= MSMg01no124_h07.b1 MSMg01no124_h07.b1 CHROMAT_FILE:
MSMg01no124_h07.b1 PHD_FILE: MSMg01no124_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:34 2005
(420 letters)
>mm_chr8_115560828_115561647
Length = 820
Score = 766 bits (396), Expect = 0.0
Identities = 414/424 (97%), Gaps = 8/424 (1%)
Strand = Plus / Plus
Query: 1 aattcagttgaaaggaaaattcaaagtatgtcatttgttagaaacatttatttttgtcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcagttgaaaggaaaattcaaagtatgtcatttgttagaaacatttatttttgtcaa 260
Query: 61 ggccagcacttcactctcaatagtgtttcaaaacctgcagtgttataatgatggcaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccagcacttcactctcaatagtgtttcaaaacctgcagtgttataatgatggcaatat 320
Query: 121 acacatttttctctccgaaaaatgagttgatggaaaatgaaaacataatttcaaaatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacatttttctctccgaaaaatgagttgatggaaaatgaaaacataatttcaaaatatt 380
Query: 181 gctacggatagaaggcagccacatgtgtagttctataacatgctatctgagtattttctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctacggatagaaggcagccacatgtgtagttctataacatgctatctgagtattttctg 440
Query: 241 taaaataatcacattaaacacaaggaataaggaacatgaattttttttaa----aggaag 296
|||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 441 taaaataatcacattaaacacaaggaataaggaacatgaatttt----aagggaaggaag 496
Query: 297 tcaatatgaagaaattctcaatattgtaagatatgcttgattcgaatcactatttcatta 356
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 497 tcaatatgaagaaattctcaatattgtaagatatgcttgattcgaatcagtatttcatta 556
Query: 357 atctaacttgaatatgcttaattccctcctatgtcttaatcaagacatctttaaaaatga 416
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 557 atctaacttgaatatgcttaattccatcctatgtcttaatcaagacatctttaaaaatga 616
Query: 417 tagg 420
||||
Sbjct: 617 tagg 620
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no124_h07.g1 MSMg01no124_h07.g1 CHROMAT_FILE:
MSMg01no124_h07.g1 PHD_FILE: MSMg01no124_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:35 2005
(282 letters)
>mm_chr8_115706424_115707105
Length = 682
Score = 501 bits (259), Expect = e-146
Identities = 274/279 (98%)
Strand = Plus / Minus
Query: 1 ttggttcttactcctcctcgtgggggaacatctccagtgaagctatatcacctcagcggg 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttggttcttcctcctcctcgtgggggaacatctccagtgaagctatatcacctcagcggg 591
Query: 61 ccccaaaaagaatcaaacaaggacaaacatcaaaccacagaaacagcaccaagttcttgc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aagcaaaaagaatcaaacaaggacaaacatcaaaccacagaaacagcaccaagttcttgc 531
Query: 121 ctaattttatcccaggagtaaaaaacaaaaacaaaaacaaaaacacaaaactagccttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ctaattttatcccaggagtaaaaaacaaaaacaaaaacaaaaacacaaaactagccttaa 471
Query: 181 aggaaaattaaatacaatggcagaatgctgaatggtgtagtttgcttaaggattcagttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aggaaaattaaatacaatggcagaatgctgaatggtgtagtttgcttaaggattcagttg 411
Query: 241 tttgtctttgcctcccacatatgagaaaggagtttagta 279
||||||||||||| |||||||||||||||||||||||||
Sbjct: 410 tttgtctttgccttccacatatgagaaaggagtttagta 372
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
